Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 170746641

GI number: 170746641

Start: 194656

End: 195669

Strand: Reverse

Name: cydB [H]

Synonym: Mrad2831_0192

Alternate gene names: 170746641

Gene position: 195669-194656 (Counterclockwise)

Preceding gene: 170746642

Following gene: 170746632

Centisome position: 3.22

GC content: 71.01

Gene sequence:

>1014_bases
ATGTCCCTCGATCTCACGCTCATCTGGGCGCTCCTCATCGCCACCGCGGTCTTCCTCTACGTGGTGATGGATGGCTTCGA
CCTCGGGGTCGGCATCCTGTTCCCGGCGGTCCGCGGCAAGGCGGACCGGGACGTCATGGTCAACACCGTTGCGCCGGTCT
GGGACGGCAACGAGACCTGGCTGATCCTCGGCGGCGGCGGGCTCTTCGCGGTGTTTCCGCTCGCCTACGCCACGATCCTG
CCGGCGCTCTACATGCCGCTGATCCTGATGCTCCTGGCGCTGGTGTTCCGCGGCGTCGCCTTCGAGATGCGGTTCCGCGC
GGCCTCGCCCGGGAGCCAGCGGACCTGGGACCGGTCCTTCTCGTGGGGCAGCTACGTGGCGACCTTCTGCCAGGGCATCT
GCCTCGGCGCCCTGGTCCAGGGCATCCGGGTCGAGGGCCGCGCCTACGCAGGCGGCTGGTGGGACTGGCTGACGCCGTTC
TCGGTGCTGACCGGCGCCGCCCTCGTGGCCGGCTACGGCCTGCTCGGCGCCTGCTGGCTGATCTGGAAGACGCAGGGCGA
CCTCCAGCTCCGGGCCTACCGGCTCGCGCGCCGGCTCGGCCTCGTCACCCTGGCGGCCATCGTGGTCGTCTCGGCCGCGA
TGCCGATCCTGAGCGAGGCGTTCCGGGCGCGCTGGCTGTCCTGGCCGAACCTCGCCCTGGCCGCGCCGGTGCCGGCTCTG
GTCGCGCTGCTGGCGTGGCGCTTCTTCGTCGCGCTCGATCGACGGGCCGAGGTGACGCCGTTCCTCTGCGCCCTGGGGCT
GTTCCTGATGTCGTATGTCGGGCTCGGGATCAGCCTGTGGCCGATGATCGTCCCGCCCGCGATCTCGATCTGGGACGCGG
CAACCCACCCGAGCAGCCAAGCCTTCCTGCTGGCCGGCGCGGTGGTCCTGGTGCCGATGGTCCTGGCCTACACGGGCTAC
GTCTACTGGCTGTTCCGCGGCAAGGTCGCGGCGGGCGCGCCGGGCTATCACTGA

Upstream 100 bases:

>100_bases
GACAGCCGATCCGCACCGCCGGCATCACGCCCGCCCCCGCCCTCGTCGCCGGCGCACAGGATGCCGGCCGCCCCCTCGCG
CAGCCCGCGGAGTAGTCCCG

Downstream 100 bases:

>100_bases
GGCCGCGGCCCGTCGCGGGCGTGGGCGGCGGGGATCGGCGCGGGCCGCGCCGATCCCCGCCCACTCGCGCTCCGGGTCAC
GGGCCGGCGTGGGCGCCCTT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSLDLTLIWALLIATAVFLYVVMDGFDLGVGILFPAVRGKADRDVMVNTVAPVWDGNETWLILGGGGLFAVFPLAYATIL
PALYMPLILMLLALVFRGVAFEMRFRAASPGSQRTWDRSFSWGSYVATFCQGICLGALVQGIRVEGRAYAGGWWDWLTPF
SVLTGAALVAGYGLLGACWLIWKTQGDLQLRAYRLARRLGLVTLAAIVVVSAAMPILSEAFRARWLSWPNLALAAPVPAL
VALLAWRFFVALDRRAEVTPFLCALGLFLMSYVGLGISLWPMIVPPAISIWDAATHPSSQAFLLAGAVVLVPMVLAYTGY
VYWLFRGKVAAGAPGYH

Sequences:

>Translated_337_residues
MSLDLTLIWALLIATAVFLYVVMDGFDLGVGILFPAVRGKADRDVMVNTVAPVWDGNETWLILGGGGLFAVFPLAYATIL
PALYMPLILMLLALVFRGVAFEMRFRAASPGSQRTWDRSFSWGSYVATFCQGICLGALVQGIRVEGRAYAGGWWDWLTPF
SVLTGAALVAGYGLLGACWLIWKTQGDLQLRAYRLARRLGLVTLAAIVVVSAAMPILSEAFRARWLSWPNLALAAPVPAL
VALLAWRFFVALDRRAEVTPFLCALGLFLMSYVGLGISLWPMIVPPAISIWDAATHPSSQAFLLAGAVVLVPMVLAYTGY
VYWLFRGKVAAGAPGYH
>Mature_336_residues
SLDLTLIWALLIATAVFLYVVMDGFDLGVGILFPAVRGKADRDVMVNTVAPVWDGNETWLILGGGGLFAVFPLAYATILP
ALYMPLILMLLALVFRGVAFEMRFRAASPGSQRTWDRSFSWGSYVATFCQGICLGALVQGIRVEGRAYAGGWWDWLTPFS
VLTGAALVAGYGLLGACWLIWKTQGDLQLRAYRLARRLGLVTLAAIVVVSAAMPILSEAFRARWLSWPNLALAAPVPALV
ALLAWRFFVALDRRAEVTPFLCALGLFLMSYVGLGISLWPMIVPPAISIWDAATHPSSQAFLLAGAVVLVPMVLAYTGYV
YWLFRGKVAAGAPGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=29.9450549450549, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787213, Length=366, Percent_Identity=29.7814207650273, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36610; Mature: 36479

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDLTLIWALLIATAVFLYVVMDGFDLGVGILFPAVRGKADRDVMVNTVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCEECCCCEE
LILGGGGLFAVFPLAYATILPALYMPLILMLLALVFRGVAFEMRFRAASPGSQRTWDRSF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCCCCCCCCCCC
SWGSYVATFCQGICLGALVQGIRVEGRAYAGGWWDWLTPFSVLTGAALVAGYGLLGACWL
CHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWKTQGDLQLRAYRLARRLGLVTLAAIVVVSAAMPILSEAFRARWLSWPNLALAAPVPAL
HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH
VALLAWRFFVALDRRAEVTPFLCALGLFLMSYVGLGISLWPMIVPPAISIWDAATHPSSQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCCCCCC
AFLLAGAVVLVPMVLAYTGYVYWLFRGKVAAGAPGYH
HHHHHHHHHHHHHHHHHHHHHHHEEECCEECCCCCCC
>Mature Secondary Structure 
SLDLTLIWALLIATAVFLYVVMDGFDLGVGILFPAVRGKADRDVMVNTVAPVWDGNETW
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCEECCCCEE
LILGGGGLFAVFPLAYATILPALYMPLILMLLALVFRGVAFEMRFRAASPGSQRTWDRSF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCCCCCCCCCCC
SWGSYVATFCQGICLGALVQGIRVEGRAYAGGWWDWLTPFSVLTGAALVAGYGLLGACWL
CHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWKTQGDLQLRAYRLARRLGLVTLAAIVVVSAAMPILSEAFRARWLSWPNLALAAPVPAL
HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH
VALLAWRFFVALDRRAEVTPFLCALGLFLMSYVGLGISLWPMIVPPAISIWDAATHPSSQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCCCCCC
AFLLAGAVVLVPMVLAYTGYVYWLFRGKVAAGAPGYH
HHHHHHHHHHHHHHHHHHHHHHHEEECCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]