Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is 170761997
Identifier: 170761997
GI number: 170761997
Start: 45340
End: 47856
Strand: Direct
Name: 170761997
Synonym: UPA3_0042
Alternate gene names: NA
Gene position: 45340-47856 (Clockwise)
Preceding gene: 170762159
Following gene: 170762247
Centisome position: 6.03
GC content: 28.37
Gene sequence:
>2517_bases ATGAAAAAGTTAAAATTAATCACTTTAAGTTTATCGCCTATTCCTATCGTCGCGATCATGGCTACAGCATGTAGTACAAC AAAAAAAGAAAAAGAAGTAGATCATAAACAAGATGAATTAACTACTATAAATAATAATTTACAATTAGAATATCCACAAA ACAAAGATATAGAAACATCAGCAGCAATAAAGGAAGAAATAAAGCCTTTAAATTTGCCGTCTGGTGTTGTTTTTAGCATT AAAGAAATTAGTCCTAAAGCAAATGATGAAAGTACATTAATAGTTAAATACACCCTTAAAAAGGGAAACATAACTAAAGA ATTTAAAAAAGAAATTAATGGATTTAAAAAAATTCGTAAAGATCAAAATATCGCTAATCTAAAAGACATGCATGATGATT TTAAAACAATTTTTAATAACATTAAATTAAAAGATACGTTCGATTTTAAACTAAAAGGTCTTTTTAACTCAAATTTTGGT GAATACGATAAATTATTACCATCACAAATTATTAACAATTTTGCACAAGGTGTAGAAACTAGAATTAATACTAACCAAGA TCGTTTAGGTATTGAAGTTATAGATGTTAGTTATCCAAATAAAAATTTTGGTTCTGCTAATCGTGAAGGTAATTTAAAAA TGTCACTATTAGTAACTGATAAAAAAACAAAACAAGTTTTCATTAAATCAATAATTGCGTATGGTTTTAAAACTAATGCA ATGGGTTTAGATGAGAATGGCTCAATTCCAGGTGGTGGTGCTGATCTTGTTAAACCTAAAGTTGATGAAAATAATTATTT TAATAAAACTCAATTAGAAAGATATGAAATTGATAATCAAGCTTATTTAAATGGTTTAAAAGGCCAACATATGGGTAAAA CTTGACAACAAGTGCGTCCTGAACTTGGTGATAATGAACAAAAAATTAATGAATTTGATCAAAAAGCTAAAGGTGTAAGT CAAGATGCTTATGCGTCTGCTGCTTATAAAGGTTTTACACTCCCAGTGTATGATAAAAATGGTGATTTTAAAGGTTTATC AATTAATGAAAGTAGTTACGGCCAAGCTCGTTCATGAGTTGATACAAGAGGTCGTGACGAATGAAAAACCACTGGTTTAC CACGAACTTTACCAAACGAAAAATATCGTGATGAAGCTTTACAAACATTAGGGATTAGTTCTTTAACTTTAAAAGATGGA AAAAAAGATACTTGAGATAAATCTTCAGGAACAACATGAATCTTAGATTATCAAAAAACAAATGATAATAAATATCCTAC AAAATGATATTTTGCAACTAATTTACATGTTGCAGATACTATTACAGATAAAACAACTTCTATTGATTTAATGAAATTAA TGGATAGTGTTAAAACTAAAACAACTTTACGTTTAAGTAATTTAGATGAAAATATTTATCGTTTTGGTTTTGCAAGTAAA AATAACAAATTTTTATTAAATCATGGTCTTAAAAAAATATATGATGGTCGAAATTTCTTAAAAACTAAACCTACAGAATA CTTAACAGAACAACAAAAAGAAAAATACAAAGATGCAGGTAGTTTTGTTGATTTTGCAGTTTTTGAATTAGATTTCGAAC AATTAAAATTACTTAATGTTTGAAACAATCAACTTAACTCAAATGGCGGTGTAATTACTAAATATGATCATTCTTCTGCA CAAGATCTTGCAAAAATTATTACAAGTGATTATGCAAACCATAGTGATAAACAAATTAAATTCTTATCCAAATCATATTT AAATGATTATTCTAAAATTGATGTTCCTCTAAGATCTACATCATATAAATTCGAAGGAAAAGATGAATTATTTGCTCTTG GATGACCTAATTCAACTAGAGATGGTTTTTTTGAACGTTATGTGGATGATGATCAAACTAAATATCGTACAACAGATAAT TTTAGTTTATGAACAAATTCTGATTATCGTTTTTTTGGCAAACTAACAGAGCAAGAAGGTGGGCAACCCGCTTTCCCAAC AGAACGAACTGAACGTGGTAATTACTTGTCTTATGCGATTGGTTACCGTAGTTTTATCGATAAACCTGGTGTTCTAGATG CCTTTATTTCTGCTCCTCATACTGGCAATGATTTATATAAATCTCTTGATGGTAAAAAATATATTAATATGGGTTTGGAA TATATGCCTAGACATTATGCTCCAGCAGGAGGTGCATCTGGTTCAAGTGTGCGAAATCAAAACAATGAAATTGTAGGAAT TTATCATGTAAGTAATGAATTTGCTAGCACCGGCTTAGCAACTGCTTTTCGTTCTGAAGGATATGATTATAAAGGCTTAT ATGGTGATAAATACAAAGAATTACCACAATATGACTTAATTTATGGCGGTGGAAAAGATCAAGCTACAGGTCAATCATAT CGTGAAAAAATGAAAGAAATATATAAAAATAATAACAATATTAAAACAGCATTATTTCCAAATGGTTTTGACCAATATGA TGAAAAGTTTAAATTTAATAACAATCAAAGTAAATAA
Upstream 100 bases:
>100_bases TTTTTGCTTTATAATTAAAAAACATTCAAGTTGACTATAAATTTGAGTATTTACACTTCATATTCAATGATGCAAAAGCA TTATTAGTTAGGAAAAATTT
Downstream 100 bases:
>100_bases AGGTTAGGTTTAAATAATAAAAATGAAATTTATTAAACGTAAAACAAAATTATTAACGATTACAATTGGTGCAGTTGCTG TTAGTTCAATCTTATTAGGA
Product: lipoprotein
Products: NA
Alternate protein names: Lipoprotein LppD Family; Membrane Lipoprotein; Prolipoprotein
Number of amino acids: Translated: 838; Mature: 838
Protein sequence:
>838_residues MKKLKLITLSLSPIPIVAIMATACSTTKKEKEVDHKQDELTTINNNLQLEYPQNKDIETSAAIKEEIKPLNLPSGVVFSI KEISPKANDESTLIVKYTLKKGNITKEFKKEINGFKKIRKDQNIANLKDMHDDFKTIFNNIKLKDTFDFKLKGLFNSNFG EYDKLLPSQIINNFAQGVETRINTNQDRLGIEVIDVSYPNKNFGSANREGNLKMSLLVTDKKTKQVFIKSIIAYGFKTNA MGLDENGSIPGGGADLVKPKVDENNYFNKTQLERYEIDNQAYLNGLKGQHMGKTWQQVRPELGDNEQKINEFDQKAKGVS QDAYASAAYKGFTLPVYDKNGDFKGLSINESSYGQARSWVDTRGRDEWKTTGLPRTLPNEKYRDEALQTLGISSLTLKDG KKDTWDKSSGTTWILDYQKTNDNKYPTKWYFATNLHVADTITDKTTSIDLMKLMDSVKTKTTLRLSNLDENIYRFGFASK NNKFLLNHGLKKIYDGRNFLKTKPTEYLTEQQKEKYKDAGSFVDFAVFELDFEQLKLLNVWNNQLNSNGGVITKYDHSSA QDLAKIITSDYANHSDKQIKFLSKSYLNDYSKIDVPLRSTSYKFEGKDELFALGWPNSTRDGFFERYVDDDQTKYRTTDN FSLWTNSDYRFFGKLTEQEGGQPAFPTERTERGNYLSYAIGYRSFIDKPGVLDAFISAPHTGNDLYKSLDGKKYINMGLE YMPRHYAPAGGASGSSVRNQNNEIVGIYHVSNEFASTGLATAFRSEGYDYKGLYGDKYKELPQYDLIYGGGKDQATGQSY REKMKEIYKNNNNIKTALFPNGFDQYDEKFKFNNNQSK
Sequences:
>Translated_838_residues MKKLKLITLSLSPIPIVAIMATACSTTKKEKEVDHKQDELTTINNNLQLEYPQNKDIETSAAIKEEIKPLNLPSGVVFSI KEISPKANDESTLIVKYTLKKGNITKEFKKEINGFKKIRKDQNIANLKDMHDDFKTIFNNIKLKDTFDFKLKGLFNSNFG EYDKLLPSQIINNFAQGVETRINTNQDRLGIEVIDVSYPNKNFGSANREGNLKMSLLVTDKKTKQVFIKSIIAYGFKTNA MGLDENGSIPGGGADLVKPKVDENNYFNKTQLERYEIDNQAYLNGLKGQHMGKT*QQVRPELGDNEQKINEFDQKAKGVS QDAYASAAYKGFTLPVYDKNGDFKGLSINESSYGQARS*VDTRGRDE*KTTGLPRTLPNEKYRDEALQTLGISSLTLKDG KKDT*DKSSGTT*ILDYQKTNDNKYPTK*YFATNLHVADTITDKTTSIDLMKLMDSVKTKTTLRLSNLDENIYRFGFASK NNKFLLNHGLKKIYDGRNFLKTKPTEYLTEQQKEKYKDAGSFVDFAVFELDFEQLKLLNV*NNQLNSNGGVITKYDHSSA QDLAKIITSDYANHSDKQIKFLSKSYLNDYSKIDVPLRSTSYKFEGKDELFALG*PNSTRDGFFERYVDDDQTKYRTTDN FSL*TNSDYRFFGKLTEQEGGQPAFPTERTERGNYLSYAIGYRSFIDKPGVLDAFISAPHTGNDLYKSLDGKKYINMGLE YMPRHYAPAGGASGSSVRNQNNEIVGIYHVSNEFASTGLATAFRSEGYDYKGLYGDKYKELPQYDLIYGGGKDQATGQSY REKMKEIYKNNNNIKTALFPNGFDQYDEKFKFNNNQSK >Mature_838_residues MKKLKLITLSLSPIPIVAIMATACSTTKKEKEVDHKQDELTTINNNLQLEYPQNKDIETSAAIKEEIKPLNLPSGVVFSI KEISPKANDESTLIVKYTLKKGNITKEFKKEINGFKKIRKDQNIANLKDMHDDFKTIFNNIKLKDTFDFKLKGLFNSNFG EYDKLLPSQIINNFAQGVETRINTNQDRLGIEVIDVSYPNKNFGSANREGNLKMSLLVTDKKTKQVFIKSIIAYGFKTNA MGLDENGSIPGGGADLVKPKVDENNYFNKTQLERYEIDNQAYLNGLKGQHMGKT*QQVRPELGDNEQKINEFDQKAKGVS QDAYASAAYKGFTLPVYDKNGDFKGLSINESSYGQARS*VDTRGRDE*KTTGLPRTLPNEKYRDEALQTLGISSLTLKDG KKDT*DKSSGTT*ILDYQKTNDNKYPTK*YFATNLHVADTITDKTTSIDLMKLMDSVKTKTTLRLSNLDENIYRFGFASK NNKFLLNHGLKKIYDGRNFLKTKPTEYLTEQQKEKYKDAGSFVDFAVFELDFEQLKLLNV*NNQLNSNGGVITKYDHSSA QDLAKIITSDYANHSDKQIKFLSKSYLNDYSKIDVPLRSTSYKFEGKDELFALG*PNSTRDGFFERYVDDDQTKYRTTDN FSL*TNSDYRFFGKLTEQEGGQPAFPTERTERGNYLSYAIGYRSFIDKPGVLDAFISAPHTGNDLYKSLDGKKYINMGLE YMPRHYAPAGGASGSSVRNQNNEIVGIYHVSNEFASTGLATAFRSEGYDYKGLYGDKYKELPQYDLIYGGGKDQATGQSY REKMKEIYKNNNNIKTALFPNGFDQYDEKFKFNNNQSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93747; Mature: 93747
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLKLITLSLSPIPIVAIMATACSTTKKEKEVDHKQDELTTINNNLQLEYPQNKDIETS CCCEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCHHHHHEEECCCEEEECCCCCCCCHH AAIKEEIKPLNLPSGVVFSIKEISPKANDESTLIVKYTLKKGNITKEFKKEINGFKKIRK HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH DQNIANLKDMHDDFKTIFNNIKLKDTFDFKLKGLFNSNFGEYDKLLPSQIINNFAQGVET CCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH RINTNQDRLGIEVIDVSYPNKNFGSANREGNLKMSLLVTDKKTKQVFIKSIIAYGFKTNA HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCC MGLDENGSIPGGGADLVKPKVDENNYFNKTQLERYEIDNQAYLNGLKGQHMGKTQQVRPE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCHHCCCC LGDNEQKINEFDQKAKGVSQDAYASAAYKGFTLPVYDKNGDFKGLSINESSYGQARSVDT CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCCCCCC RGRDEKTTGLPRTLPNEKYRDEALQTLGISSLTLKDGKKDTDKSSGTTILDYQKTNDNKY CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCC PTKYFATNLHVADTITDKTTSIDLMKLMDSVKTKTTLRLSNLDENIYRFGFASKNNKFLL CCEEEEECEEEEECCCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHEEECCCCCCEEH NHGLKKIYDGRNFLKTKPTEYLTEQQKEKYKDAGSFVDFAVFELDFEQLKLLNVNNQLNS HHCHHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHEEECHHHEEEEECCCCCCC NGGVITKYDHSSAQDLAKIITSDYANHSDKQIKFLSKSYLNDYSKIDVPLRSTSYKFEGK CCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHEECCCCCCCEEECCC DELFALGPNSTRDGFFERYVDDDQTKYRTTDNFSLTNSDYRFFGKLTEQEGGQPAFPTER CCEEEECCCCCCCHHHHHHCCCCCCCEEECCCCEEECCCEEEEEEHHHCCCCCCCCCCCC TERGNYLSYAIGYRSFIDKPGVLDAFISAPHTGNDLYKSLDGKKYINMGLEYMPRHYAPA CCCCCEEEEEHHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCCCHHHHCCHHHCCCCCCCC GGASGSSVRNQNNEIVGIYHVSNEFASTGLATAFRSEGYDYKGLYGDKYKELPQYDLIYG CCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEEE GGKDQATGQSYREKMKEIYKNNNNIKTALFPNGFDQYDEKFKFNNNQSK CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHEECCCCCCC >Mature Secondary Structure MKKLKLITLSLSPIPIVAIMATACSTTKKEKEVDHKQDELTTINNNLQLEYPQNKDIETS CCCEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCHHHHHEEECCCEEEECCCCCCCCHH AAIKEEIKPLNLPSGVVFSIKEISPKANDESTLIVKYTLKKGNITKEFKKEINGFKKIRK HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH DQNIANLKDMHDDFKTIFNNIKLKDTFDFKLKGLFNSNFGEYDKLLPSQIINNFAQGVET CCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH RINTNQDRLGIEVIDVSYPNKNFGSANREGNLKMSLLVTDKKTKQVFIKSIIAYGFKTNA HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCC MGLDENGSIPGGGADLVKPKVDENNYFNKTQLERYEIDNQAYLNGLKGQHMGKTQQVRPE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCHHCCCC LGDNEQKINEFDQKAKGVSQDAYASAAYKGFTLPVYDKNGDFKGLSINESSYGQARSVDT CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCCCCCC RGRDEKTTGLPRTLPNEKYRDEALQTLGISSLTLKDGKKDTDKSSGTTILDYQKTNDNKY CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCC PTKYFATNLHVADTITDKTTSIDLMKLMDSVKTKTTLRLSNLDENIYRFGFASKNNKFLL CCEEEEECEEEEECCCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHEEECCCCCCEEH NHGLKKIYDGRNFLKTKPTEYLTEQQKEKYKDAGSFVDFAVFELDFEQLKLLNVNNQLNS HHCHHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHEEECHHHEEEEECCCCCCC NGGVITKYDHSSAQDLAKIITSDYANHSDKQIKFLSKSYLNDYSKIDVPLRSTSYKFEGK CCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHEECCCCCCCEEECCC DELFALGPNSTRDGFFERYVDDDQTKYRTTDNFSLTNSDYRFFGKLTEQEGGQPAFPTER CCEEEECCCCCCCHHHHHHCCCCCCCEEECCCCEEECCCEEEEEEHHHCCCCCCCCCCCC TERGNYLSYAIGYRSFIDKPGVLDAFISAPHTGNDLYKSLDGKKYINMGLEYMPRHYAPA CCCCCEEEEEHHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCCCHHHHCCHHHCCCCCCCC GGASGSSVRNQNNEIVGIYHVSNEFASTGLATAFRSEGYDYKGLYGDKYKELPQYDLIYG CCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEEE GGKDQATGQSYREKMKEIYKNNNNIKTALFPNGFDQYDEKFKFNNNQSK CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA