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The map label for this gene is pspD

Identifier: 170683517

GI number: 170683517

Start: 1836235

End: 1836456

Strand: Reverse

Name: pspD

Synonym: EcSMS35_1815

Alternate gene names: 170683517

Gene position: 1836456-1836235 (Counterclockwise)

Preceding gene: 170684285

Following gene: 170682062

Centisome position: 36.23

GC content: 55.86

Gene sequence:

>222_bases
ATGAATACTCGCTGGCAACAGGCCGGGCAAAAGGTGAAGCCTGGGTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGC
ACTGCGCTATGGCCCGGCGGGTGTGGCGGGCTGGGCGATAAAATCAGTTGCTCGCCGACCGCTGAAAATGTTGCTGGCTG
TGGCGCTGGAACCGCTGTTAAGTCGGGCTGCCAATAAACTGGCACAGCGTTATAAAAGGTGA

Upstream 100 bases:

>100_bases
AACTGGCGGCAAGTGAAACGCGTTTACGCGAGATGGAACGTTATGTCACTTCCGATACTTTCACGTTACGTAGCCGTTTC
CGTCAACTGTGAGGAAAGTT

Downstream 100 bases:

>100_bases
GGGGAATTTCGCAAAAATTGTTAAATCTCAGGCGTATAATGGATGGCAATTTTCATCCATAGAAGGACGCTTACATGTTT
AAAAAAGGCTTACTTGCTCT

Product: peripheral inner membrane phage-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR

Sequences:

>Translated_73_residues
MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR
>Mature_73_residues
MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR

Specific function: The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspD family

Homologues:

Organism=Escherichia coli, GI1787565, Length=73, Percent_Identity=100, Blast_Score=142, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSPD_ECO57 (P0AFV9)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D90864
- PIR:   E85754
- RefSeq:   NP_287881.1
- RefSeq:   NP_309911.1
- ProteinModelPortal:   P0AFV9
- EnsemblBacteria:   EBESCT00000026665
- EnsemblBacteria:   EBESCT00000056250
- GeneID:   912668
- GeneID:   961326
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2478
- KEGG:   ecs:ECs1884
- GeneTree:   EBGT00050000011024
- HOGENOM:   HBG416125
- OMA:   SARYINK
- ProtClustDB:   PRK10497
- BioCyc:   ECOL83334:ECS1884-MONOMER
- GO:   GO:0005737
- InterPro:   IPR014321
- TIGRFAMs:   TIGR02979

Pfam domain/function: PF09584 Phageshock_PspD

EC number: NA

Molecular weight: Translated: 8042; Mature: 8042

Theoretical pI: Translated: 12.42; Mature: 12.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLL
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAANKLAQRYKR
HHHHHHHHHHHCC
>Mature Secondary Structure
MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLL
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAANKLAQRYKR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796