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The map label for this gene is ycjR [H]

Identifier: 170683456

GI number: 170683456

Start: 1829027

End: 1829815

Strand: Reverse

Name: ycjR [H]

Synonym: EcSMS35_1808

Alternate gene names: 170683456

Gene position: 1829815-1829027 (Counterclockwise)

Preceding gene: 170681445

Following gene: 170684205

Centisome position: 36.1

GC content: 52.34

Gene sequence:

>789_bases
ATGAAAATAGGCACACAGAATCAGGCATTCTTTCCGGAAAATATTCTGGAGAAATTTCGTTATATCAAAGAGATGGGCTT
CGATGGTTTTGAGATTGACGGCAAACTGCTGGTCAACAACATCGAAGAAGTCAAAGCGGCAATCAAAGAAACCGGTTTAC
CGGTGACCACCGCCTGCGGTGGCTATGACGGTTGGATTGGCGACTTTATCGAAGAGCGTCGACTTAATGGCTTAAAGCAG
ATCGAACGCATTCTTGAAGCTCTGGCAGAAGTGGGCGGTAAAGGTATCGTCGTTCCGGCTGCATGGGGCATGTTTACCTT
CCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGATGGCGACCGCAAAATGGTGAGTGATTCCCTGCGCGTACTGGAAC
AGGCGGCCGCACGTACCGGAACCGTGGTGTACCTCGAACCGTTAAACCGCTATCAGGATCACATGATCAACACCCTCGCC
GATGCTCGTCGTTACATCGTCGAAAACGATCTTAAACATGTACAGATTATCGGCGATTTCTATCACATGAATATCGAAGA
AGATAACCTGGCGCAGGCGCTGCATGACAACCGCGACCTGCTCGGTCATGTGCATATTGCCGATAACCATCGCTACCAGC
CGGGCAGCGGCACCCTGGATTTCCACGCGCTGTTTGAACAGCTGCGCGCGGATAACTATCAGGGCTATGTGGTGTACGAA
GGGCGTATCCGGGCAGAAGATCCTGCCCAGGCGTACCGTGATTCTTTGGCCTGGTTGCGTACCTGCTAA

Upstream 100 bases:

>100_bases
CCTTTGCCAACAGCCCGGAAAGCTACATGCAGTATGTCGATCAGCATCCGGAACAGAGCATCAAAATGGGCGTTACGTTT
TAATTCAAAGGAATGAAAAA

Downstream 100 bases:

>100_bases
GAGGTCTTTGTGAAAAGTGCAATGACAAGCTCTCCGCTGCGGGTCGCGATCATAGGCGCGGGCCAGGTGGCGGATAAAGT
TCATGCTTCGTACTACTGCA

Product: AP endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQ
IERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQAAARTGTVVYLEPLNRYQDHMINTLA
DARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE
GRIRAEDPAQAYRDSLAWLRTC

Sequences:

>Translated_262_residues
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQ
IERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQAAARTGTVVYLEPLNRYQDHMINTLA
DARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE
GRIRAEDPAQAYRDSLAWLRTC
>Mature_262_residues
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQ
IERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQAAARTGTVVYLEPLNRYQDHMINTLA
DARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE
GRIRAEDPAQAYRDSLAWLRTC

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=262, Percent_Identity=99.618320610687, Blast_Score=542, Evalue=1e-156,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 29804; Mature: 29804

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACG
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCCEEECCC
GYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDG
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCC
DRKMVSDSLRVLEQAAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDF
HHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH
YHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE
EEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
GRIRAEDPAQAYRDSLAWLRTC
CEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACG
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCCEEECCC
GYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDG
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCC
DRKMVSDSLRVLEQAAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDF
HHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH
YHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYE
EEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
GRIRAEDPAQAYRDSLAWLRTC
CEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]