Click here to switch to the map view.

The map label for this gene is rhaD [H]

Identifier: 170026060

GI number: 170026060

Start: 4236642

End: 4237466

Strand: Direct

Name: rhaD [H]

Synonym: YPK_3847

Alternate gene names: 170026060

Gene position: 4236642-4237466 (Clockwise)

Preceding gene: 170026059

Following gene: 170026061

Centisome position: 90.34

GC content: 53.09

Gene sequence:

>825_bases
ATGCAAGCTATTCTATCTTCCTGGTTTATTCAGGGAATGATTAAAGCCACCAGTGATATGTGGCACAAAGGGTGGGATGA
ACGTAACGGCGGCAATATCAGCTTGCGACTGCTCGCTGAAGAGGTTGAACCTTATCGTCGTGATTTTTACCAACAACCCC
GCAAAGTGGAGCTCACGCAACCGGCTCCCGAACTGGCAAATAGCTGGTTCCTTGTCACCGGTTCCGGCAAGTTTTTCCGC
AATGTTGAATTGAACCCAGCGGAAAATCTGGTGTTGCTGCAAGTCAGCAATGATGGCATGGCTTATCACATTCACTGGGG
CCTAACTCAGGGAGGGTTACCCACCTCGGAGCTGGCCGCACACTTCCAATCTCACATCGTCAGGATGCAGGTCAGCGGCG
GCACCAACCGGGTCATTATGCACTGCCATGCCACCAATCTGATTGCCCTGAGTTATGTACAAAAACTGGAGAACGCCAGC
TTCACGCGCCTGTTATGGGAAGGCAGTACGGAATGTTTGGTGGTATTTCCTGATGGGATTGGCATTGTGCCATGGATGGT
GCCGGGCACCGATGGGATCGGCACACAAACGGCGGAGCAAATGCGTGAACACAGCCTGGTGCTTTGGCCTTTCCACGGTA
TTTTTGGCAGCGGGCCCACACTGGATGACGCCTTTGGCCTGATTGATACCGCCGAGAAATCAGCCGAAATCATGGTGAAA
GTCCTGTCGATGGGCGGCAAAAAACAGACCATTTCACGTGAACAACTGATCGCGCTGGCGGCTCGTTTTGATGTTACGCC
GATGGCAGCGGCGCTGGACGCCTAA

Upstream 100 bases:

>100_bases
TTACTGCCAGCGCAATGACGTACCGGTTGATGCCCGCTGGCTTGACGCAGTACGTGAATATGAACAACAGATTCTCAGCC
AACGTTAAGGACTCGTAATT

Downstream 100 bases:

>100_bases
TCCCCTCGATTAAAGCCCTGGCTAACGTCGGGGCGAATCATTTATGCGTTATTTGAGGAGTACAGTATGAGTTTCATGTT
GGCACTACCGAAAATCAGCT

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQPAPELANSWFLVTGSGKFFR
NVELNPAENLVLLQVSNDGMAYHIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA

Sequences:

>Translated_274_residues
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQPAPELANSWFLVTGSGKFFR
NVELNPAENLVLLQVSNDGMAYHIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA
>Mature_274_residues
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQPAPELANSWFLVTGSGKFFR
NVELNPAENLVLLQVSNDGMAYHIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790336, Length=272, Percent_Identity=68.3823529411765, Blast_Score=403, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR013447 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =4.1.2.19 [H]

Molecular weight: Translated: 30352; Mature: 30352

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCHHHHHHHCCCCEEEECC
PAPELANSWFLVTGSGKFFRNVELNPAENLVLLQVSNDGMAYHIHWGLTQGGLPTSELAA
CCHHHCCCEEEEEECCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHH
HFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENASFTRLLWEGSTECLVVFPDGI
HHHHCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCC
GIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
CEEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHCCHHCCHHHHHHHHH
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA
HHHCCCCCHHCCHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCHHHHHHHCCCCEEEECC
PAPELANSWFLVTGSGKFFRNVELNPAENLVLLQVSNDGMAYHIHWGLTQGGLPTSELAA
CCHHHCCCEEEEEECCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHH
HFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENASFTRLLWEGSTECLVVFPDGI
HHHHCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCC
GIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
CEEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHCCHHCCHHHHHHHHH
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA
HHHCCCCCHHCCHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA