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The map label for this gene is rhaA [H]

Identifier: 170026059

GI number: 170026059

Start: 4235373

End: 4236629

Strand: Direct

Name: rhaA [H]

Synonym: YPK_3846

Alternate gene names: 170026059

Gene position: 4235373-4236629 (Clockwise)

Preceding gene: 170026058

Following gene: 170026060

Centisome position: 90.32

GC content: 52.98

Gene sequence:

>1257_bases
ATGACGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGCCGCACT
CACCCGTCTTGATACGCTACCGGTCTCCATGCACTGCTGGCAAGGCGATGATGTCACCGGTTTTGAGGATCCCGATGGCG
TATTGACCGGCGGAATTCAGGCAACAGGAAACTATCCCGGCAAAGCGCGCAATGCGACCGAGTTGCGTTCTGACCTTGAA
TTGGCTTTGGCATTAATTCCTGGCCCTAAGCGCCTCAATTTACATGCTATTTATCTGGAATCTGACACGCCGGTTGCGCG
CAATAAAATTGAGCCGCGCCACTTTAGCCACTGGGTTGCATGGGCCAAAAAACACCAGTTGGGGCTGGATTTTAACCCCT
CTTGCTTCTCTCACCCACTCAGCGCTGACGGCTTTACCTTGTCTCATGCTGATCCGGAAATCCGCCAGTTCTGGATTGAA
CACTGTCAGGCGAGTCGCCGGGTTTCTGCCTATTTTGGTGAACAGTTAGGAACGCCGTCGGTCATGAATATCTGGATCCC
CGATGGTATGAAAGACACGCCGATTGATCGCCTTGCCCCCCGTCAGCGCCTGCTATCGGCTCTGGATGAAGTCATCAGCG
AGAAGTTAAACCCGGCTCACCATATTGATGCGGTTGAGAGCAAATTGTTTGGTATTGGTGCTGAAAGTTACACCGTAGGC
TCTAACGAGTTTTATATGGGCTATGCCGCCAGTCGCCAAACGGCGCTGTGTCTGGATGCGGGTCACTTCCATCCAACCGA
GGTGATTTCCGACAAAATATCCAGCGCCATGCTGTATGTCCCACGCCTGCTATTGCATGTCAGCCGTCCGGTTCGCTGGG
ACAGTGACCATGTGGTGTTACTGGATGATGAAACCCAAGCCATCGCCAGCGAAATTATTCGTCACAACCTGTTTGATCGG
GTTCACATCGGCCTCGACTTCTTTGATGCCTCCATTAACCGGATTGCCGCTTGGGTTATTGGCACCCGCAACATGAAAAA
GGCCCTGCTACGCGCCTTACTGGAGCCGACCGACAGGCTACGTCAACTGGAATTACGCGGTGATTACACTGCACGGCTGG
CGCTGCTGGAAGAACAAAAATCCCTGCCATGGCAAGCCATCTGGGAAGGTTACTGCCAGCGCAATGACGTACCGGTTGAT
GCCCGCTGGCTTGACGCAGTACGTGAATATGAACAACAGATTCTCAGCCAACGTTAA

Upstream 100 bases:

>100_bases
ACTTCCCATTGCACCATTTATCCCCTCACGACAATTCGGACTTTGCTGCCCATTGGCTGCAATTCCAGTCACTGAGTCAA
TTACCTAAGGAACTTTGCAT

Downstream 100 bases:

>100_bases
GGACTCGTAATTATGCAAGCTATTCTATCTTCCTGGTTTATTCAGGGAATGATTAAAGCCACCAGTGATATGTGGCACAA
AGGGTGGGATGAACGTAACG

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLE
LALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDR
VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVD
ARWLDAVREYEQQILSQR

Sequences:

>Translated_418_residues
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLE
LALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDR
VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVD
ARWLDAVREYEQQILSQR
>Mature_417_residues
TNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLEL
ALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEH
CQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS
NEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDRV
HIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDA
RWLDAVREYEQQILSQR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI48994990, Length=418, Percent_Identity=85.4066985645933, Blast_Score=758, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009308
- InterPro:   IPR013022 [H]

Pfam domain/function: PF06134 RhaA [H]

EC number: =5.3.1.14 [H]

Molecular weight: Translated: 47161; Mature: 47030

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCEE
ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA
ECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHHHH
WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRVSAYFGEQLGTPS
HHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEC
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL
ECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHH
RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HEEHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCEE
ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA
ECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHHHH
WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRVSAYFGEQLGTPS
HHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEC
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL
ECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHH
RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HEEHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA