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The map label for this gene is rhaB [H]

Identifier: 170026058

GI number: 170026058

Start: 4233958

End: 4235376

Strand: Direct

Name: rhaB [H]

Synonym: YPK_3845

Alternate gene names: 170026058

Gene position: 4233958-4235376 (Clockwise)

Preceding gene: 170026053

Following gene: 170026059

Centisome position: 90.29

GC content: 53.14

Gene sequence:

>1419_bases
ATGCTGGCAAGTTATTATCCCGGTCAGCAACAGCTTACGTTGCGGGAAGTCTGCCGCTTTACCAACCAGATTAAATCTAT
TGATGGCTCCGATGTCTGGGATATCGATGCCATTGAACAATCTATCCGTGAGGGACTGAGCCAACTCGACAGTGAAGGGA
TAGCGCTGGACAGCATCGGTATTGATAGCTGGGGAGTTGATTTTGTTTTGCTTGATAAGCAAGGGAAACGGATCGGACAG
CCCGTATCTTACCGTGATAGTCGTACGCAGGGAGTGATGGCGCGGGCGCAGCAGACGCTGGGTAGCAATGCGATTTATCG
CCGCACCGGTATTCAGTTCTTGCCGTTCAATACGCTGTATCAACTGCGGGCATTAAGTGAACAACAACCTCACTTACTCG
CCGATGTTGCCCACCTATTATTGATCCCAGACTATTTGCATTACCGCCTTACCGGCCAGCTAAACTGGGAATATACCAAT
GCCAGTACTACCCAGTTGCTCAACATCGAAACCGGCGATTGGGATAGCGATTTACTGGCCTATGCCGGCGTACCGGCCCA
TTGGTTTGCCAAACCCGGCAAACCTGGCAATACCATCGGCTATTGGCACAGCGCCAACGGTCAGCAGGTTCCGGTGGTGG
CCGTTGCCACCCATGACACGGCTAGCGCGGTTCTTGCCGCCCCGCTTATTGATGCTGATGCTGCCTATCTTAGCTCCGGT
ACCTGGTCACTTATGGGCTTCGAAAGCGGTACACCACTCACCCACCAGCAGGCGCAGTGCAGCAATATCACCAACGAAGG
GGGCGCAGAAGGCCGCTACCGCGTACTCAAAAATATTATGGGTCTGTGGCTACTGCAACGGGCGACGGATGAATTGCAGA
TTGACGATTTACCGCAGCTTATTGAGCAAGCGGCACGACAACCCGCTTGCCGCTCGCTGATCAATCCCAATGACAGCCGT
TTTATTAATCCACCCAATATGTGCCGTGAGATCCAAAACGCCTGCCGTGAACATCAGTTCCCCGTGCCGAACACGGCCGC
CCAACTGGCCCGCTGTATCTTTGATAGCCTCGCCATGTTGTACCGGCAAGTGGCTCAAGAATTGGCAACACTCCGCGGAC
GCCCAATCAGCCACTTGCATATCGTCGGTGGCGGCTGTCAGAACCAATTTCTGAATCAACTGTGTGCCGATGCCTGTGCC
TTGAATGTAAGCATGGGGCCGGTTGAGGCCTCCACGCTCGGCAATATTGGTAGCCAATTAATCTCGCTGGGTGAGGTCGC
TGATGTCACCCATTACCGCCGTATCGTGGCGAATAACTTCCCATTGCACCATTTATCCCCTCACGACAATTCGGACTTTG
CTGCCCATTGGCTGCAATTCCAGTCACTGAGTCAATTACCTAAGGAACTTTGCATATGA

Upstream 100 bases:

>100_bases
TACATGTTCGCCATCTACATGCTCACCATCGGCAGTCACATCGCCAAAAGCTGCACGGCACATGGTTGCTATTGACCTTG
GCGCGTCCAGCGGACGGGTG

Downstream 100 bases:

>100_bases
CGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGCCGCACTCACC
CGTCTTGATACGCTACCGGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQ
PVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTN
ASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSG
TWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSR
FINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACA
LNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI

Sequences:

>Translated_472_residues
MLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQ
PVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTN
ASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSG
TWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSR
FINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACA
LNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI
>Mature_472_residues
MLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQ
PVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTN
ASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSG
TWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSR
FINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACA
LNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=471, Percent_Identity=61.9957537154989, Blast_Score=602, Evalue=1e-173,
Organism=Escherichia coli, GI1789168, Length=384, Percent_Identity=26.8229166666667, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 52182; Mature: 52182

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
IDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLY
CCCCCCCEEEECCCCCHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCEEECHHHHH
QLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLA
HHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCEEEEEEECCCCCCHHHH
YAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSG
HCCCCHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHCCC
TWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQL
CEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
IEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAML
HHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
YRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQL
HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
IDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLY
CCCCCCCEEEECCCCCHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCEEECHHHHH
QLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLA
HHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCEEEEEEECCCCCCHHHH
YAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSG
HCCCCHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHCCC
TWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQL
CEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
IEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAML
HHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
YRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQL
HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA