Click here to switch to the map view.

The map label for this gene is ycaR [C]

Identifier: 170024886

GI number: 170024886

Start: 2927490

End: 2927672

Strand: Reverse

Name: ycaR [C]

Synonym: YPK_2661

Alternate gene names: 170024886

Gene position: 2927672-2927490 (Counterclockwise)

Preceding gene: 170024887

Following gene: 170024885

Centisome position: 62.43

GC content: 46.99

Gene sequence:

>183_bases
ATGGACCACCGTTTACTCGAAATTGTTGCCTGCCCAGTCTGCAACGGCAAATTATACTTTAATAAAGAAAACCTTGAGTT
GGTGTGTAAGGTGGATAATCTGGCTTACCCGGTACGCGACGGTATCCCTGTCTTGTTGGAAAACGAGGCCCGTCCACTGT
CAATTGATGAGAAGCACGCATGA

Upstream 100 bases:

>100_bases
TGGCTGTAGGGAATCACCACATCGGCATAGTTAACCTGTATGAGCGGATATGGTATCCTCAAACACTTTCCTGCTGGCTA
AACTCCATTTTGGAGGATGT

Downstream 100 bases:

>100_bases
GTTTCATTGCTATAATTCCCGCCCGCTATGCTTCAACCCGTTTACCCGGCAAACCACTGGCTGATATTGCGGGCAAACCG
ATGGTCGTCCATGTTATGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 60

Protein sequence:

>60_residues
MDHRLLEIVACPVCNGKLYFNKENLELVCKVDNLAYPVRDGIPVLLENEARPLSIDEKHA

Sequences:

>Translated_60_residues
MDHRLLEIVACPVCNGKLYFNKENLELVCKVDNLAYPVRDGIPVLLENEARPLSIDEKHA
>Mature_60_residues
MDHRLLEIVACPVCNGKLYFNKENLELVCKVDNLAYPVRDGIPVLLENEARPLSIDEKHA

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=60, Percent_Identity=71.6666666666667, Blast_Score=98, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1399_YERPE (Q74VT6)

Other databases:

- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AI0170
- RefSeq:   NP_992560.1
- RefSeq:   YP_002346422.1
- ProteinModelPortal:   Q74VT6
- SMR:   Q74VT6
- GeneID:   1174240
- GeneID:   2765422
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO1399
- KEGG:   ypm:YP_1194
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- ProtClustDB:   CLSK888830
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6820; Mature: 6820

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHRLLEIVACPVCNGKLYFNKENLELVCKVDNLAYPVRDGIPVLLENEARPLSIDEKHA
CCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCEECCCCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MDHRLLEIVACPVCNGKLYFNKENLELVCKVDNLAYPVRDGIPVLLENEARPLSIDEKHA
CCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCEECCCCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430