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The map label for this gene is cspJ [H]

Identifier: 170024887

GI number: 170024887

Start: 2928220

End: 2928429

Strand: Reverse

Name: cspJ [H]

Synonym: YPK_2662

Alternate gene names: 170024887

Gene position: 2928429-2928220 (Counterclockwise)

Preceding gene: 170024889

Following gene: 170024886

Centisome position: 62.45

GC content: 45.71

Gene sequence:

>210_bases
ATGACGTTAAAAATGGGGCGCGTGAAGTGGTTCAACCAGTCGGAAGGCTACGGTTTCATTTCACCACACGATGGTGGTTC
GGATGTTTATGTCAACAAAACGGCCATTGCCAACACCAAAAACAAATCACTGAATGAAGGGCAGGACGTTGAGTTTTCTA
CATATCGTAGTATTCACGGACCGTCAGCAGCAGATGTGATCGCTTTCTAA

Upstream 100 bases:

>100_bases
AGCTCATAGAGGTTTAGTCAAAAAACTTTAGGATGGGCAACTGCATCTAAACAATAAATAATAATGAGTTGTTAGGATGC
CCAGTAAAAGGAAATTTATT

Downstream 100 bases:

>100_bases
GCAAACGGCTACCTCATCGGTAGCCGTTTCTCCCTTCTCGTCAGCGCCATAACGTCGTTAGCGGCTCTTACTCACCTGAA
TCACTGACGGATGTGACCTC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSAADVIAF

Sequences:

>Translated_69_residues
MTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSAADVIAF
>Mature_68_residues
TLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSAADVIAF

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=52.1739130434783, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=50, Blast_Score=72, Evalue=6e-15,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=48.5294117647059, Blast_Score=69, Evalue=5e-14,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=52.9411764705882, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=48.5714285714286, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=47.1428571428571, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7584; Mature: 7453

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHG
CCCCCCCEEEECCCCCEEEECCCCCCCEEEEECEEECCCCCCCCCCCCCCEEECEECCCC
PSAADVIAF
CCCCEEEEC
>Mature Secondary Structure 
TLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHG
CCCCCCEEEECCCCCEEEECCCCCCCEEEEECEEECCCCCCCCCCCCCCEEECEECCCC
PSAADVIAF
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]