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The map label for this gene is rimN

Identifier: 170022581

GI number: 170022581

Start: 341428

End: 342000

Strand: Direct

Name: rimN

Synonym: YPK_0320

Alternate gene names: 170022581

Gene position: 341428-342000 (Clockwise)

Preceding gene: 170022580

Following gene: 170022582

Centisome position: 7.28

GC content: 46.77

Gene sequence:

>573_bases
ATGAATCAACAAGAAAATAATTTTGTGCTGGCGGATATAGTGCGGGCATTGCGGCAAGAAGAGGTTATCGCTTATCCGAC
AGAAGCAGTTTTTGGTTTAGGATGCGATCCCGATAGTGAAAAAGCGGTTAATACTTTGCTAGCGTTAAAACAGCGGCCAT
GGCAGAAAGGTTTGATCTTGGTTGCCGCTAATTATGCTCAGTTAGAGCCTTATATTAATGATTCAATGCTTAATGAAATA
CAACGAGAAACCCTCTTTTCCACTTGGCCGGGGCCGATAACGTGGGTGATACCTGCCCGAGTAGAAACACCGCAATGGCT
AACAGGCTGTTTTGACTCATTGGCGGTGAGAGTAAGCAATCACCCACTTGTACAGCAGCTTTGTGCGGAATATGGCAAGC
CGTTAGTGTCAACTAGCGCTAATTTAAGTGGGCATGAGCCGTGCCGCACGGAAGAAGAAGTCAGAATACAGTTTGGCCCT
TCATTACCGGTGTTATCCGGTCACGTTGGTGGCCGTTTGAATCCATCTGAAATCAGAGATGCCTTAACGGGTAAGCGGTT
TCGCCAAGGGTAG

Upstream 100 bases:

>100_bases
TGCCACTACCCACTGTTAATAGAAAAAAGAACGGCACGGGGTATCAAACGTATCTGTGCCAGTAAGTTATGTGGGAAGGC
TGTAGCCAGTGAGTCATAGT

Downstream 100 bases:

>100_bases
GATATTGTATGGATCAGAAGTTTGCAGTATTTGGTAATCCTATTAGTCATAGTAAATCGCCGAGGATCCATACGCTTTTT
TCCGAGCAAACAGGCATTGA

Product: putative ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEI
QRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGP
SLPVLSGHVGGRLNPSEIRDALTGKRFRQG

Sequences:

>Translated_190_residues
MNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEI
QRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGP
SLPVLSGHVGGRLNPSEIRDALTGKRFRQG
>Mature_190_residues
MNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEI
QRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGP
SLPVLSGHVGGRLNPSEIRDALTGKRFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=190, Percent_Identity=67.8947368421053, Blast_Score=270, Evalue=6e-74,
Organism=Escherichia coli, GI87081864, Length=171, Percent_Identity=25.7309941520468, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_YERP3 (A7FNJ8)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402826.1
- ProteinModelPortal:   A7FNJ8
- STRING:   A7FNJ8
- GeneID:   5385060
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3878
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   PRK10634
- BioCyc:   YPSE349747:YPSIP31758_3878-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 21153; Mature: 21153

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLIL
CCCCCCCEEHHHHHHHHHHCCEEECCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
VAANYAQLEPYINDSMLNEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSN
EEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
HPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGPSLPVLSGHVGGRLNPSEIRD
CHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHH
ALTGKRFRQG
HHHHHHHCCC
>Mature Secondary Structure
MNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLIL
CCCCCCCEEHHHHHHHHHHCCEEECCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
VAANYAQLEPYINDSMLNEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSN
EEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
HPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGPSLPVLSGHVGGRLNPSEIRD
CHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHH
ALTGKRFRQG
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA