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The map label for this gene is yrdD [H]

Identifier: 170022580

GI number: 170022580

Start: 340887

End: 341426

Strand: Direct

Name: yrdD [H]

Synonym: YPK_0319

Alternate gene names: 170022580

Gene position: 340887-341426 (Clockwise)

Preceding gene: 170022579

Following gene: 170022581

Centisome position: 7.27

GC content: 47.04

Gene sequence:

>540_bases
ATGACGAAGAAAGTTATTACTAAGGATAATGGATCTTGTCCTGAGTGCGGGTCAGCGTTGGTGATTCGCAGTGGGGGGCA
CGGTCCATTCCTTGGTTGTTCACATTATCCAGATTGCCAGTATATACGCCCACTAAAAGCGCAGGCTGACGGGCATGTTG
TGAAAACTCTGGAAGGGCAACCTTGTCCTGAGTGTGGTTCGGATATGGTGCTACGCCAAGGCCGCTTCGGTATGTTTATT
GGTTGCAGCCAATATCCACAGTGTGATCATACAGAAGTTATAGATAAACCTGATGAGACGTCTATTGATTGCCCACAGTG
TGGTCAAGGGAAACTGTTACAACGTAAGTCTCGGTTTGGGAAAGTTTTTCATGCCTGTAATCGCTACCCCGACTGTCAAT
TTACGCTCAACCAACCGCCAATTGCAGGAAAGTGTGGTTATTGCCACTACCCACTGTTAATAGAAAAAAGAACGGCACGG
GGTATCAAACGTATCTGTGCCAGTAAGTTATGTGGGAAGGCTGTAGCCAGTGAGTCATAG

Upstream 100 bases:

>100_bases
AATGCCTATAAGCAGATGGAAGAGCTGCTCTTTGAAGTCAATGACGGTTATTTGCACTAGGTGCTAAGATTGCTGGCTAA
TGGCTTATATAGAAGGCGTT

Downstream 100 bases:

>100_bases
TATGAATCAACAAGAAAATAATTTTGTGCTGGCGGATATAGTGCGGGCATTGCGGCAAGAAGAGGTTATCGCTTATCCGA
CAGAAGCAGTTTTTGGTTTA

Product: DNA topoisomerase type IA Zn finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMVLRQGRFGMFI
GCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTAR
GIKRICASKLCGKAVASES

Sequences:

>Translated_179_residues
MTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMVLRQGRFGMFI
GCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTAR
GIKRICASKLCGKAVASES
>Mature_178_residues
TKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMVLRQGRFGMFIG
CSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARG
IKRICASKLCGKAVASES

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=172, Percent_Identity=68.6046511627907, Blast_Score=264, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 19616; Mature: 19485

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQ
CCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
PCPECGSDMVLRQGRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFG
CCCCCCCHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
KVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARGIKRICASKLCGKAVASES
HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQ
CCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
PCPECGSDMVLRQGRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFG
CCCCCCCHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
KVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARGIKRICASKLCGKAVASES
HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]