Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623738
Identifier: 167623738
GI number: 167623738
Start: 2161281
End: 2161634
Strand: Direct
Name: 167623738
Synonym: Shal_1808
Alternate gene names: NA
Gene position: 2161281-2161634 (Clockwise)
Preceding gene: 167623737
Following gene: 167623739
Centisome position: 41.35
GC content: 40.11
Gene sequence:
>354_bases ATGGTTACCGATAAAGACGGCTATATACACTTAGTTCAGTATTTGACTGAGCATCTGGGCATATTTGAAAACTCTCAGCA ACAAAGTGTCACCGAAGATACGGTGATGGAACTGTTTGAAGAGCAACTTGCTGCACAAATCATCATGGTTTGTGGTCAGA ATCCATCTTTGACATTCAGCCAAAGAAATCTCGTGGTCCGAGAGGTCGACTCTATCGTGTATGATCTTGAAGAGATTTTA GCGAGGGTTTCTGGTCATAAAGCAACAGCAGAACAATCTGTGTTTATCTCAGAGCTTTCATGTCTTATTAAGAACTTGTT TGATCAAGAGATAGCAAGAATGATCTCGCTTTAA
Upstream 100 bases:
>100_bases GATACTATCTTTGCAAGAAGATAAATAATAAATTGACTACACACTTTGCGCGAACGGTAAAATTTGCCGTGTGCATAGGT TTGTGTATTTTAGGTTGACT
Downstream 100 bases:
>100_bases TGCCAAAATATTATATTTAGTTACAGTATTATCGCTGTCCCAGCTTGTTGGGTTTTGTCTAAAGGCCTAATGTAGCAGTA ATGGTATAGGAGAGTGGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 117; Mature: 117
Protein sequence:
>117_residues MVTDKDGYIHLVQYLTEHLGIFENSQQQSVTEDTVMELFEEQLAAQIIMVCGQNPSLTFSQRNLVVREVDSIVYDLEEIL ARVSGHKATAEQSVFISELSCLIKNLFDQEIARMISL
Sequences:
>Translated_117_residues MVTDKDGYIHLVQYLTEHLGIFENSQQQSVTEDTVMELFEEQLAAQIIMVCGQNPSLTFSQRNLVVREVDSIVYDLEEIL ARVSGHKATAEQSVFISELSCLIKNLFDQEIARMISL >Mature_117_residues MVTDKDGYIHLVQYLTEHLGIFENSQQQSVTEDTVMELFEEQLAAQIIMVCGQNPSLTFSQRNLVVREVDSIVYDLEEIL ARVSGHKATAEQSVFISELSCLIKNLFDQEIARMISL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13295; Mature: 13295
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTDKDGYIHLVQYLTEHLGIFENSQQQSVTEDTVMELFEEQLAAQIIMVCGQNPSLTFS CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH QRNLVVREVDSIVYDLEEILARVSGHKATAEQSVFISELSCLIKNLFDQEIARMISL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVTDKDGYIHLVQYLTEHLGIFENSQQQSVTEDTVMELFEEQLAAQIIMVCGQNPSLTFS CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH QRNLVVREVDSIVYDLEEILARVSGHKATAEQSVFISELSCLIKNLFDQEIARMISL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA