Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623737

Identifier: 167623737

GI number: 167623737

Start: 2160449

End: 2161036

Strand: Direct

Name: 167623737

Synonym: Shal_1807

Alternate gene names: NA

Gene position: 2160449-2161036 (Clockwise)

Preceding gene: 167623736

Following gene: 167623738

Centisome position: 41.33

GC content: 43.37

Gene sequence:

>588_bases
ATGAAAAGTATAATTATGGGCATATTATTGCTGCCTTTGTCGCTGATGGTATCGGCTGGCACTTGGACTGTTGAAAATGA
CAGCTCAGAGGTTAACTTTATATCCGTTAAGAAGGGCGATATTGCCGAGGTTCATCATTTTAATTCCATCGCCGGTACCT
TGACGGACAAGGGGAAGTTCGATTTTTCAATTGCTTTGGCAAGTGTGGCAACAAACATCGATATTCGTAATGAACGTATG
GAGTCTTTACTATTCGAGGTCGATAAGTACCCAAAACTGATACTAAAGGCTCATGTTGACCCTAAGATACTTAATAGTCT
TGCCGTTGGCTCGGTGAAAGTTGCAACGATTGACGCCGAAGTTAGCTTACATGGCAAGAAGCAGAAGATGGCGTTTACGG
TGAGTATCGCAAAGCTATCTGACTCTCACATCCTTGTTGCGAGTGTAGCGCCTATCATTGTCATGGCTGGCAGTTTTGGC
CTGTCTGCGGGAGTCGATAAATTACGTGAAATAGCCGGATTATCGGCAATAAGTAAAGCGGTACCCGTGTCATTTATGCT
CAATCTTAAACAACAGTCTAAACGATAG

Upstream 100 bases:

>100_bases
GGCTTAGGTGTAAAAAATGGGTGTCAGTGGATAGTTAACTGTTGAATTAGGTTAAGCTTAACTATTAAGGTGAATAACGA
GATCACGAGAGGGAGTGGAG

Downstream 100 bases:

>100_bases
CTTAAACGGTATAACGCTAACTTTGAGCGGCTTTGAGTGCTTTTGGGGGAGAGGTGCGCTTAAGTTATGTTGTAAAGTGT
GGCGCATGTTGTGGGAAAAG

Product: YceI family protein

Products: NA

Alternate protein names: YceI Like Family Protein; YceI-Like Family Protein; YceI Like Family

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKSIIMGILLLPLSLMVSAGTWTVENDSSEVNFISVKKGDIAEVHHFNSIAGTLTDKGKFDFSIALASVATNIDIRNERM
ESLLFEVDKYPKLILKAHVDPKILNSLAVGSVKVATIDAEVSLHGKKQKMAFTVSIAKLSDSHILVASVAPIIVMAGSFG
LSAGVDKLREIAGLSAISKAVPVSFMLNLKQQSKR

Sequences:

>Translated_195_residues
MKSIIMGILLLPLSLMVSAGTWTVENDSSEVNFISVKKGDIAEVHHFNSIAGTLTDKGKFDFSIALASVATNIDIRNERM
ESLLFEVDKYPKLILKAHVDPKILNSLAVGSVKVATIDAEVSLHGKKQKMAFTVSIAKLSDSHILVASVAPIIVMAGSFG
LSAGVDKLREIAGLSAISKAVPVSFMLNLKQQSKR
>Mature_195_residues
MKSIIMGILLLPLSLMVSAGTWTVENDSSEVNFISVKKGDIAEVHHFNSIAGTLTDKGKFDFSIALASVATNIDIRNERM
ESLLFEVDKYPKLILKAHVDPKILNSLAVGSVKVATIDAEVSLHGKKQKMAFTVSIAKLSDSHILVASVAPIIVMAGSFG
LSAGVDKLREIAGLSAISKAVPVSFMLNLKQQSKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20919; Mature: 20919

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIIMGILLLPLSLMVSAGTWTVENDSSEVNFISVKKGDIAEVHHFNSIAGTLTDKGKF
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
DFSIALASVATNIDIRNERMESLLFEVDKYPKLILKAHVDPKILNSLAVGSVKVATIDAE
CCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEE
VSLHGKKQKMAFTVSIAKLSDSHILVASVAPIIVMAGSFGLSAGVDKLREIAGLSAISKA
EEECCCCEEEEEEEEEEEECCCEEEEEEHHCHHEEECCCCCHHHHHHHHHHHHHHHHHHH
VPVSFMLNLKQQSKR
CCHHHEEECHHHCCC
>Mature Secondary Structure
MKSIIMGILLLPLSLMVSAGTWTVENDSSEVNFISVKKGDIAEVHHFNSIAGTLTDKGKF
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
DFSIALASVATNIDIRNERMESLLFEVDKYPKLILKAHVDPKILNSLAVGSVKVATIDAE
CCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEE
VSLHGKKQKMAFTVSIAKLSDSHILVASVAPIIVMAGSFGLSAGVDKLREIAGLSAISKA
EEECCCCEEEEEEEEEEEECCCEEEEEEHHCHHEEECCCCCHHHHHHHHHHHHHHHHHHH
VPVSFMLNLKQQSKR
CCHHHEEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA