Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623739
Identifier: 167623739
GI number: 167623739
Start: 2162203
End: 2163078
Strand: Direct
Name: 167623739
Synonym: Shal_1809
Alternate gene names: NA
Gene position: 2162203-2163078 (Clockwise)
Preceding gene: 167623738
Following gene: 167623742
Centisome position: 41.37
GC content: 42.12
Gene sequence:
>876_bases ATGCTTAAAAAAGTGGGATTATGCTTATTGATCCTGACGTCATCTTTATCGGCGACAGCAAGCGAGAAAGCGGTGATAGG TTCAACCGCACAGATGTCAGTAGCCCATGCGGGCCTCTCTTATATTGCACGTATAGATACTGGTGCGGTTAATACTTCAC TGCACGCCTACGATTTAAAAGTTGAAGGTGGTAGTGCTAAAAAAATGAAAGATAACATTGGCAAAATGGTGTCTTTTACC ACAGAGAATAATGCTGGTGAGAAGAAACGCTTAAAAGCAAAAATTGTTAAGACCTCAACGGTGAGTAACTCTCAAGGCAC TGAAACGCGTTACATGGTTGATTTAGACGTTGGCTATAAGGGGAAGGAGCGTAAGGTTCGGGTAAACTTAAGGGATCGTA GTCACATGGACTATAAACTCTTAATCGGTCGTAACTGGCTTAAGGGCCGTTATGTTGTCGATGTCTCTGAGAAAAAACTG ATTGGCCCAACAGCTTCGATTAGCATTGTTGAATCTGGATTAATGTTTAAGACGCGTATCGATACTGGCGCGGTTGAGAA TTCGCTACATGCCTATGATATGAGAATTGACAATGAAGATCCTGACATGGAAAAAAATGTCGGTAAAGTTATTCACTTTA TGACTGAAAATGAAAAGGGTGAATCTCACTTAGTCAAGTCTCGCATTGTGGAAACATCGCTGATCCGAAATGCTCAAGGC AGTGAAATTCGTTATATGGTTGAGCTCAAGATTGGTGAGCCGGGTCAGGAGTATAAGGTGAAGGTGAACCTAAGAGACAG AAGCAAGATGTCATACAAACTCTTAATTGGCCGTAACTGGCTACAAGGGCACTACATCGTGGATGTATCACGTTAA
Upstream 100 bases:
>100_bases TAGCTATGTAATAGTTTCAACCTCTTTATTCATCTCCAAATCTTGCTATCATAAACGCAAGATAAGTCATATTGTTTATT AAACGAGCTAAGGAATCACG
Downstream 100 bases:
>100_bases AAGAGTCGATAAAATCAATCTAAGGCCGCACAATAAATGTGCGGCCTTTTTTATTTAAGCTAAAGTGTATTGGTTGTATT GGTTGTATTGGTTGTATTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MLKKVGLCLLILTSSLSATASEKAVIGSTAQMSVAHAGLSYIARIDTGAVNTSLHAYDLKVEGGSAKKMKDNIGKMVSFT TENNAGEKKRLKAKIVKTSTVSNSQGTETRYMVDLDVGYKGKERKVRVNLRDRSHMDYKLLIGRNWLKGRYVVDVSEKKL IGPTASISIVESGLMFKTRIDTGAVENSLHAYDMRIDNEDPDMEKNVGKVIHFMTENEKGESHLVKSRIVETSLIRNAQG SEIRYMVELKIGEPGQEYKVKVNLRDRSKMSYKLLIGRNWLQGHYIVDVSR
Sequences:
>Translated_291_residues MLKKVGLCLLILTSSLSATASEKAVIGSTAQMSVAHAGLSYIARIDTGAVNTSLHAYDLKVEGGSAKKMKDNIGKMVSFT TENNAGEKKRLKAKIVKTSTVSNSQGTETRYMVDLDVGYKGKERKVRVNLRDRSHMDYKLLIGRNWLKGRYVVDVSEKKL IGPTASISIVESGLMFKTRIDTGAVENSLHAYDMRIDNEDPDMEKNVGKVIHFMTENEKGESHLVKSRIVETSLIRNAQG SEIRYMVELKIGEPGQEYKVKVNLRDRSKMSYKLLIGRNWLQGHYIVDVSR >Mature_291_residues MLKKVGLCLLILTSSLSATASEKAVIGSTAQMSVAHAGLSYIARIDTGAVNTSLHAYDLKVEGGSAKKMKDNIGKMVSFT TENNAGEKKRLKAKIVKTSTVSNSQGTETRYMVDLDVGYKGKERKVRVNLRDRSHMDYKLLIGRNWLKGRYVVDVSEKKL IGPTASISIVESGLMFKTRIDTGAVENSLHAYDMRIDNEDPDMEKNVGKVIHFMTENEKGESHLVKSRIVETSLIRNAQG SEIRYMVELKIGEPGQEYKVKVNLRDRSKMSYKLLIGRNWLQGHYIVDVSR
Specific function: Unknown
COG id: COG4067
COG function: function code O; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32518; Mature: 32518
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKVGLCLLILTSSLSATASEKAVIGSTAQMSVAHAGLSYIARIDTGAVNTSLHAYDLK CCCHHHEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHEEEEECCCCCCCEEEEEEEE VEGGSAKKMKDNIGKMVSFTTENNAGEKKRLKAKIVKTSTVSNSQGTETRYMVDLDVGYK ECCCCCHHHHHCCCCEEEEEECCCCCCHHHHEEEEEEEEECCCCCCCCEEEEEEEECCCC GKERKVRVNLRDRSHMDYKLLIGRNWLKGRYVVDVSEKKLIGPTASISIVESGLMFKTRI CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEECCCCEEEEEECCEEEEEEC DTGAVENSLHAYDMRIDNEDPDMEKNVGKVIHFMTENEKGESHLVKSRIVETSLIRNAQG CCCCCCCCEEEEEEEECCCCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC SEIRYMVELKIGEPGQEYKVKVNLRDRSKMSYKLLIGRNWLQGHYIVDVSR CEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEECCEEEEEECC >Mature Secondary Structure MLKKVGLCLLILTSSLSATASEKAVIGSTAQMSVAHAGLSYIARIDTGAVNTSLHAYDLK CCCHHHEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHEEEEECCCCCCCEEEEEEEE VEGGSAKKMKDNIGKMVSFTTENNAGEKKRLKAKIVKTSTVSNSQGTETRYMVDLDVGYK ECCCCCHHHHHCCCCEEEEEECCCCCCHHHHEEEEEEEEECCCCCCCCEEEEEEEECCCC GKERKVRVNLRDRSHMDYKLLIGRNWLKGRYVVDVSEKKLIGPTASISIVESGLMFKTRI CCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEECCCCEEEEEECCEEEEEEC DTGAVENSLHAYDMRIDNEDPDMEKNVGKVIHFMTENEKGESHLVKSRIVETSLIRNAQG CCCCCCCCEEEEEEEECCCCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC SEIRYMVELKIGEPGQEYKVKVNLRDRSKMSYKLLIGRNWLQGHYIVDVSR CEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA