Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is hflX [H]
Identifier: 167623692
GI number: 167623692
Start: 2110636
End: 2112006
Strand: Direct
Name: hflX [H]
Synonym: Shal_1762
Alternate gene names: 167623692
Gene position: 2110636-2112006 (Clockwise)
Preceding gene: 167623691
Following gene: 167623695
Centisome position: 40.38
GC content: 42.23
Gene sequence:
>1371_bases GTGAACTCGACCTTCTTAACTAGATGGATATCTATGTCTACGACCATGGAACAAGCTGATACTCGTGCATTATTAATCTC AATTCGCACTCCTAATACAAAAATAGAGGATATTGATAGATCGTTAGAGGAGTTGGGACGTTTAGTCAGCACGCTTGGTT TTACTGTTTTTGCAACGCAAACTCAGAAGCAGAGTTCGACTCAGCGTTTATCGGTGCTAGGCGCGGGCAAGCTCGAAGAG TTGGCCAGAATGACAAAGGAACTTGATGATGTTGAACAAAGAGACTCTTTAGCGAACATTGATGAGCAAGAATTGAACGA ATTTTTAATCGAATCTAAGACTCAGCTACATGCCAATGTTGTTGTGTTTGATTGTGAACTCAGTCCAATGCAGTTGCGTA ATGTTGAGAATGTATTAGGCGTTGAAGTATTTGATCGAACTGGCATTATTATTGAAATTTTTAGCCGTCATGCCAATACA CGAACGGCGCGGTTACAGGTTGAGCTAGCACGATTAAATTATTTAACCCCAAGGCTACGCAGTGATCATGGAGGAGACCG TGAACGTCAAAGTGGTCGAGGTGTTGGGGAGAGTTTGTTTGCTACCGAGCGTCGTAAAATTCGCGATAAGCAAGCCGAAC TAAGGCGTGAACTTAAAAAAGTTCAAGAAGTGATGCAAGAGCAACGAAGCAGTCGTATCGAAACGCCTTGTGTCGCTTTA GTTGGGTATACCAATGCTGGAAAATCATCCTTGATGCGTGCTTTGACAGGCTCTGATGTATTGGTAGAAGACAAGTTATT TGCTACTTTAGATACCACTGTACGTGCCCTATCACCAGATACTCAACCTCGAATACTCATTTCAGATACGGTTGGGTTTA TAAATAAATTACCACACGATTTAATCGCTTCATTCCACTCCACATTAGAGGAAGCGAAAGGCGCGACATTACTTTTGTAT GTTGTCGATGCGAGTGATAAAGATTTTAGAACACAGTTAAAGGTCGTTGATGCTGCATTGCCGCAGTCACACCTTAATAG TAACAATCGCCTGTTACTGCTTAATAAAGTAGATTGTTTAACGCCAATAGAGCGACAAGCATTAAGCTGCGAGTTTCCTA ATGCGTTGCAGATCTCCACACGTAATGATGATGACATAAGTTTAGTGCATCAAGCCATTCAAGATGTTATTGCAGAGCAG ATGTGTACTGCCTGTTTTAATATCCCTTATACCGCTAGCGGTATTATGGGAGAGATCCACGGTAAGATGCAGGTGATAGA AGAGGAGTACCATGAAAATGGTATGAGGATAACGCTGAAAGCCAGCGCTGCCTCGCTAGAGCGGTTAAATAAAATGCTAC AACAACAGTAG
Upstream 100 bases:
>100_bases CTAGTTTCTACTAGATGTGCGGACTTTAGTTTTAGATTAAATTGATAGCTTAGATTTCTTTCATATAAATTCGCGTGACA AAAGCGTAGGATCCAGTGTT
Downstream 100 bases:
>100_bases TAGAGACATTAGACAATAAAAAAGCACTCGTTGAGTGCTTTTTTATTTAATGGAATGAGTATTAGCTTAAGCGCTTACCT GAGCGCTTTAAACGCTCTTG
Product: GTP1/OBG protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MNSTFLTRWISMSTTMEQADTRALLISIRTPNTKIEDIDRSLEELGRLVSTLGFTVFATQTQKQSSTQRLSVLGAGKLEE LARMTKELDDVEQRDSLANIDEQELNEFLIESKTQLHANVVVFDCELSPMQLRNVENVLGVEVFDRTGIIIEIFSRHANT RTARLQVELARLNYLTPRLRSDHGGDRERQSGRGVGESLFATERRKIRDKQAELRRELKKVQEVMQEQRSSRIETPCVAL VGYTNAGKSSLMRALTGSDVLVEDKLFATLDTTVRALSPDTQPRILISDTVGFINKLPHDLIASFHSTLEEAKGATLLLY VVDASDKDFRTQLKVVDAALPQSHLNSNNRLLLLNKVDCLTPIERQALSCEFPNALQISTRNDDDISLVHQAIQDVIAEQ MCTACFNIPYTASGIMGEIHGKMQVIEEEYHENGMRITLKASAASLERLNKMLQQQ
Sequences:
>Translated_456_residues MNSTFLTRWISMSTTMEQADTRALLISIRTPNTKIEDIDRSLEELGRLVSTLGFTVFATQTQKQSSTQRLSVLGAGKLEE LARMTKELDDVEQRDSLANIDEQELNEFLIESKTQLHANVVVFDCELSPMQLRNVENVLGVEVFDRTGIIIEIFSRHANT RTARLQVELARLNYLTPRLRSDHGGDRERQSGRGVGESLFATERRKIRDKQAELRRELKKVQEVMQEQRSSRIETPCVAL VGYTNAGKSSLMRALTGSDVLVEDKLFATLDTTVRALSPDTQPRILISDTVGFINKLPHDLIASFHSTLEEAKGATLLLY VVDASDKDFRTQLKVVDAALPQSHLNSNNRLLLLNKVDCLTPIERQALSCEFPNALQISTRNDDDISLVHQAIQDVIAEQ MCTACFNIPYTASGIMGEIHGKMQVIEEEYHENGMRITLKASAASLERLNKMLQQQ >Mature_456_residues MNSTFLTRWISMSTTMEQADTRALLISIRTPNTKIEDIDRSLEELGRLVSTLGFTVFATQTQKQSSTQRLSVLGAGKLEE LARMTKELDDVEQRDSLANIDEQELNEFLIESKTQLHANVVVFDCELSPMQLRNVENVLGVEVFDRTGIIIEIFSRHANT RTARLQVELARLNYLTPRLRSDHGGDRERQSGRGVGESLFATERRKIRDKQAELRRELKKVQEVMQEQRSSRIETPCVAL VGYTNAGKSSLMRALTGSDVLVEDKLFATLDTTVRALSPDTQPRILISDTVGFINKLPHDLIASFHSTLEEAKGATLLLY VVDASDKDFRTQLKVVDAALPQSHLNSNNRLLLLNKVDCLTPIERQALSCEFPNALQISTRNDDDISLVHQAIQDVIAEQ MCTACFNIPYTASGIMGEIHGKMQVIEEEYHENGMRITLKASAASLERLNKMLQQQ
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310124269, Length=143, Percent_Identity=40.5594405594406, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI310124267, Length=143, Percent_Identity=40.5594405594406, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI310124171, Length=143, Percent_Identity=40.5594405594406, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI310124169, Length=143, Percent_Identity=40.5594405594406, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI310133116, Length=143, Percent_Identity=40.5594405594406, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI310133118, Length=143, Percent_Identity=40.5594405594406, Blast_Score=106, Evalue=6e-23, Organism=Escherichia coli, GI1790615, Length=431, Percent_Identity=32.9466357308585, Blast_Score=202, Evalue=3e-53, Organism=Caenorhabditis elegans, GI17561038, Length=320, Percent_Identity=31.25, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24650079, Length=266, Percent_Identity=33.8345864661654, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 51287; Mature: 51287
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSTFLTRWISMSTTMEQADTRALLISIRTPNTKIEDIDRSLEELGRLVSTLGFTVFATQ CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEC TQKQSSTQRLSVLGAGKLEELARMTKELDDVEQRDSLANIDEQELNEFLIESKTQLHANV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHEEEEE VVFDCELSPMQLRNVENVLGVEVFDRTGIIIEIFSRHANTRTARLQVELARLNYLTPRLR EEEECCCCCHHHHHHHHHHHHEEECCCCCEEEEHHHCCCCEEEEEEEEEHHHHHCCCHHC SDHGGDRERQSGRGVGESLFATERRKIRDKQAELRRELKKVQEVMQEQRSSRIETPCVAL CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE VGYTNAGKSSLMRALTGSDVLVEDKLFATLDTTVRALSPDTQPRILISDTVGFINKLPHD EECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCHH LIASFHSTLEEAKGATLLLYVVDASDKDFRTQLKVVDAALPQSHLNSNNRLLLLNKVDCL HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCC TPIERQALSCEFPNALQISTRNDDDISLVHQAIQDVIAEQMCTACFNIPYTASGIMGEIH CHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GKMQVIEEEYHENGMRITLKASAASLERLNKMLQQQ HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC >Mature Secondary Structure MNSTFLTRWISMSTTMEQADTRALLISIRTPNTKIEDIDRSLEELGRLVSTLGFTVFATQ CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEC TQKQSSTQRLSVLGAGKLEELARMTKELDDVEQRDSLANIDEQELNEFLIESKTQLHANV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHEEEEE VVFDCELSPMQLRNVENVLGVEVFDRTGIIIEIFSRHANTRTARLQVELARLNYLTPRLR EEEECCCCCHHHHHHHHHHHHEEECCCCCEEEEHHHCCCCEEEEEEEEEHHHHHCCCHHC SDHGGDRERQSGRGVGESLFATERRKIRDKQAELRRELKKVQEVMQEQRSSRIETPCVAL CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE VGYTNAGKSSLMRALTGSDVLVEDKLFATLDTTVRALSPDTQPRILISDTVGFINKLPHD EECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCHH LIASFHSTLEEAKGATLLLYVVDASDKDFRTQLKVVDAALPQSHLNSNNRLLLLNKVDCL HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCC TPIERQALSCEFPNALQISTRNDDDISLVHQAIQDVIAEQMCTACFNIPYTASGIMGEIH CHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GKMQVIEEEYHENGMRITLKASAASLERLNKMLQQQ HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]