Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is wzb [C]
Identifier: 167623691
GI number: 167623691
Start: 2110054
End: 2110515
Strand: Direct
Name: wzb [C]
Synonym: Shal_1761
Alternate gene names: 167623691
Gene position: 2110054-2110515 (Clockwise)
Preceding gene: 167623687
Following gene: 167623692
Centisome position: 40.37
GC content: 44.81
Gene sequence:
>462_bases GTGTTTGTATGTATGGGCAACATTTGTCGCTCTCCTTCGGCTGAGGCGATGTTTAGATTAAAAGCACGAGCAGCCCAGTT AGACATTGAGATAGATTCGGCTGGGACGATTGCTTATCACCAAGGGCATTCACCGGATAAGCGCTCTATCGCTGCCGGTG TTAAGCGAGGGTTGAGCTTTGATGGCATGAGAGCTAGGCAGGTTGAGCAAACTGACTTTGTCGATTTTGATTTGATATTA GCGGCAGATGAGCAAAACTTGCAGGACTTAAAGCGTATATGCCCTAAGCTATATCAGTCTAAGCTGGTGCTTATTTTAGA CTTCTGCGATTTCGCATCTAATGCAGCAATTTATACTGAGGTGCCAGACCCATATTATGGGGAGGGTGATGGTTTTGAGT TGGTGCTAGATCTGCTCGATAATAGCTGCGAGCAACTGGTAAAACGTATTCAAATTAAATAG
Upstream 100 bases:
>100_bases TTAATCGTCTGAATTTATTCGTCTTTACCTTAGCGTTATTGGGTCTATTTTTTGTGCTGATTGAGTGCTATGCTATTGAT ATCAATGGGTTTAATGGTTT
Downstream 100 bases:
>100_bases CAGCACTTAGCAGGTGTAGACTAGTTTCTACTAGATGTGCGGACTTTAGTTTTAGATTAAATTGATAGCTTAGATTTCTT TCATATAAATTCGCGTGACA
Product: protein tyrosine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MFVCMGNICRSPSAEAMFRLKARAAQLDIEIDSAGTIAYHQGHSPDKRSIAAGVKRGLSFDGMRARQVEQTDFVDFDLIL AADEQNLQDLKRICPKLYQSKLVLILDFCDFASNAAIYTEVPDPYYGEGDGFELVLDLLDNSCEQLVKRIQIK
Sequences:
>Translated_153_residues MFVCMGNICRSPSAEAMFRLKARAAQLDIEIDSAGTIAYHQGHSPDKRSIAAGVKRGLSFDGMRARQVEQTDFVDFDLIL AADEQNLQDLKRICPKLYQSKLVLILDFCDFASNAAIYTEVPDPYYGEGDGFELVLDLLDNSCEQLVKRIQIK >Mature_153_residues MFVCMGNICRSPSAEAMFRLKARAAQLDIEIDSAGTIAYHQGHSPDKRSIAAGVKRGLSFDGMRARQVEQTDFVDFDLIL AADEQNLQDLKRICPKLYQSKLVLILDFCDFASNAAIYTEVPDPYYGEGDGFELVLDLLDNSCEQLVKRIQIK
Specific function: Dephosphorylates Wzc. Required For The Extracellular Polysaccharide Colanic Acid Synthesis. Probably Involved In The Export Of Colanic Acid From The Cell To Medium. [C]
COG id: COG0394
COG function: function code T; Protein-tyrosine-phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the low molecular weight phosphotyrosine protein phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI4757714, Length=151, Percent_Identity=35.0993377483444, Blast_Score=86, Evalue=1e-17, Organism=Homo sapiens, GI6005988, Length=151, Percent_Identity=34.4370860927152, Blast_Score=85, Evalue=3e-17, Organism=Escherichia coli, GI1788375, Length=148, Percent_Identity=29.0540540540541, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081812, Length=150, Percent_Identity=27.3333333333333, Blast_Score=66, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6325330, Length=152, Percent_Identity=34.2105263157895, Blast_Score=101, Evalue=5e-23, Organism=Drosophila melanogaster, GI78706770, Length=156, Percent_Identity=35.8974358974359, Blast_Score=95, Evalue=2e-20, Organism=Drosophila melanogaster, GI78706772, Length=156, Percent_Identity=35.8974358974359, Blast_Score=95, Evalue=2e-20, Organism=Drosophila melanogaster, GI78706766, Length=154, Percent_Identity=36.3636363636364, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI78706768, Length=154, Percent_Identity=36.3636363636364, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI78706764, Length=127, Percent_Identity=37.7952755905512, Blast_Score=88, Evalue=3e-18, Organism=Drosophila melanogaster, GI78711846, Length=156, Percent_Identity=31.4102564102564, Blast_Score=70, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000106 - InterPro: IPR017867 [H]
Pfam domain/function: PF01451 LMWPc [H]
EC number: =3.1.3.48 [H]
Molecular weight: Translated: 17127; Mature: 17127
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFVCMGNICRSPSAEAMFRLKARAAQLDIEIDSAGTIAYHQGHSPDKRSIAAGVKRGLSF CEEEECCHHCCCCHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC DGMRARQVEQTDFVDFDLILAADEQNLQDLKRICPKLYQSKLVLILDFCDFASNAAIYTE CCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEE VPDPYYGEGDGFELVLDLLDNSCEQLVKRIQIK CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure MFVCMGNICRSPSAEAMFRLKARAAQLDIEIDSAGTIAYHQGHSPDKRSIAAGVKRGLSF CEEEECCHHCCCCHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC DGMRARQVEQTDFVDFDLILAADEQNLQDLKRICPKLYQSKLVLILDFCDFASNAAIYTE CCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEE VPDPYYGEGDGFELVLDLLDNSCEQLVKRIQIK CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]