Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is msrAB [H]
Identifier: 167623695
GI number: 167623695
Start: 2114372
End: 2115304
Strand: Direct
Name: msrAB [H]
Synonym: Shal_1765
Alternate gene names: 167623695
Gene position: 2114372-2115304 (Clockwise)
Preceding gene: 167623692
Following gene: 167623698
Centisome position: 40.45
GC content: 43.3
Gene sequence:
>933_bases ATGAGGCTAGATAGAGATGTATATATGCGTAAATTAACAGAACTTGAAAAGCATGTAATAGAGCAAAAGGGGACCGAGCG ACCATTTAGCGGTGAGTATTACCAACATGATGCACCGGGAGTATATTGCTGTAAAAAGTGCGATGCGCCCTTATATCGCT CGGAAAGTAAGTTTAACGCCCATTGTGGCTGGCCAGCCTTTGATGATGAGATTGAAGGGGCGGTAAAGCGCAATATTGAT GCAGACGGAATGCGAGTCGAAATTGTTTGCGCCCAGTGTGATGCTCATTTAGGTCATGTGTTTGAAGGGGAGATGTTGAC GGCTAAAAATATCAGACACTGCGTCAATTCGGTCTCAATGGCTTTTAAATCAGCAGATGAACTTATAGATAAGTCCTCTG GTACAGAGTTAGCCACTTTTGGCGGAGGCTGCTTTTGGTGCATAGAGGCTGTATTTTCAGCGATTAAGGGCGTAAGTAAA GTGACTTCTGGTTATGCGGGAGGCACTGCTGATGATGCGAATTACAAAGCCGTGTGCAGCGGACAAACCGGTCATGCTGA GGTGGTACAGATTGAATTTGATCCTAAAGAGGTCAGTTTTGAGCGCTTGCTTGAGGTATTTTGGCAAAGCCACGATCCTA CAAGCTTAAATCGACAAGGTAACGATGTTGGTCCCCAATACCGTTCGGTGATCTTTATTCATGACGAGTCTCAAGCTCAA GTCGCAAATAATATGATTGAGGACTTAACTAGAGTTGCAGCATGGCCTAATCCAATCGTGACTCAAGTTGTAGCTTACAA CGGGTTTTTCGCTGCTGAAAATTACCATAACGATTATTTTGAATTAAATGGTGAGCAGCCATATTGTCAGATGGTCATAA AACCTAAGGTAGATAAAGTAAAAGCCTTGTTCGCGGATAGATTGAAGAAATAA
Upstream 100 bases:
>100_bases ATTATGATAAGTTTGCTAACCAACTTGAAAGCTTTTGCTAATCTGTAGGGTCTATTGACTGTTGACCCAGAACATAAGAG GCCAATGAGGGATATTGGCA
Downstream 100 bases:
>100_bases AAAGTTGAGCTAATAAAAAAGACGGGCAATGCCCGTCTTTTTCGTTTTTATCGCTTATGCTATTTGCGATTAGTCTGAAT CGATTTACGAGTCGAGCTTA
Product: bifunctional methionine sulfoxide reductase B/A protein
Products: NA
Alternate protein names: Peptide methionine sulfoxide reductase msrB; Peptide-methionine (R)-S-oxide reductase; Peptide methionine sulfoxide reductase msrA; Protein-methionine-S-oxide reductase; Peptide-methionine (S)-S-oxide reductase; Peptide Met(O) reductase [H]
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MRLDRDVYMRKLTELEKHVIEQKGTERPFSGEYYQHDAPGVYCCKKCDAPLYRSESKFNAHCGWPAFDDEIEGAVKRNID ADGMRVEIVCAQCDAHLGHVFEGEMLTAKNIRHCVNSVSMAFKSADELIDKSSGTELATFGGGCFWCIEAVFSAIKGVSK VTSGYAGGTADDANYKAVCSGQTGHAEVVQIEFDPKEVSFERLLEVFWQSHDPTSLNRQGNDVGPQYRSVIFIHDESQAQ VANNMIEDLTRVAAWPNPIVTQVVAYNGFFAAENYHNDYFELNGEQPYCQMVIKPKVDKVKALFADRLKK
Sequences:
>Translated_310_residues MRLDRDVYMRKLTELEKHVIEQKGTERPFSGEYYQHDAPGVYCCKKCDAPLYRSESKFNAHCGWPAFDDEIEGAVKRNID ADGMRVEIVCAQCDAHLGHVFEGEMLTAKNIRHCVNSVSMAFKSADELIDKSSGTELATFGGGCFWCIEAVFSAIKGVSK VTSGYAGGTADDANYKAVCSGQTGHAEVVQIEFDPKEVSFERLLEVFWQSHDPTSLNRQGNDVGPQYRSVIFIHDESQAQ VANNMIEDLTRVAAWPNPIVTQVVAYNGFFAAENYHNDYFELNGEQPYCQMVIKPKVDKVKALFADRLKK >Mature_310_residues MRLDRDVYMRKLTELEKHVIEQKGTERPFSGEYYQHDAPGVYCCKKCDAPLYRSESKFNAHCGWPAFDDEIEGAVKRNID ADGMRVEIVCAQCDAHLGHVFEGEMLTAKNIRHCVNSVSMAFKSADELIDKSSGTELATFGGGCFWCIEAVFSAIKGVSK VTSGYAGGTADDANYKAVCSGQTGHAEVVQIEFDPKEVSFERLLEVFWQSHDPTSLNRQGNDVGPQYRSVIFIHDESQAQ VANNMIEDLTRVAAWPNPIVTQVVAYNGFFAAENYHNDYFELNGEQPYCQMVIKPKVDKVKALFADRLKK
Specific function: Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine [H]
COG id: COG0225
COG function: function code O; Peptide methionine sulfoxide reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the msrA Met sulfoxide reductase family [H]
Homologues:
Organism=Homo sapiens, GI6912516, Length=152, Percent_Identity=44.7368421052632, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI208609995, Length=160, Percent_Identity=43.75, Blast_Score=136, Evalue=3e-32, Organism=Homo sapiens, GI37620216, Length=134, Percent_Identity=43.2835820895522, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI301336164, Length=134, Percent_Identity=43.2835820895522, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI301336162, Length=134, Percent_Identity=43.2835820895522, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI73089054, Length=134, Percent_Identity=43.2835820895522, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI117606353, Length=133, Percent_Identity=39.0977443609023, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI208609993, Length=104, Percent_Identity=43.2692307692308, Blast_Score=90, Evalue=3e-18, Organism=Escherichia coli, GI1790665, Length=174, Percent_Identity=38.5057471264368, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1788077, Length=121, Percent_Identity=42.1487603305785, Blast_Score=99, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17553450, Length=112, Percent_Identity=41.9642857142857, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI115532676, Length=112, Percent_Identity=41.9642857142857, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17533973, Length=146, Percent_Identity=32.8767123287671, Blast_Score=79, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6319816, Length=120, Percent_Identity=50, Blast_Score=116, Evalue=5e-27, Organism=Saccharomyces cerevisiae, GI6320881, Length=162, Percent_Identity=32.7160493827161, Blast_Score=96, Evalue=7e-21, Organism=Drosophila melanogaster, GI24664627, Length=146, Percent_Identity=39.7260273972603, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24645799, Length=129, Percent_Identity=42.6356589147287, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI45553335, Length=129, Percent_Identity=42.6356589147287, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21356369, Length=129, Percent_Identity=42.6356589147287, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24664631, Length=165, Percent_Identity=37.5757575757576, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI45553131, Length=141, Percent_Identity=38.2978723404255, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24645801, Length=140, Percent_Identity=39.2857142857143, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24645804, Length=140, Percent_Identity=39.2857142857143, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI221378664, Length=128, Percent_Identity=42.1875, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI221378662, Length=135, Percent_Identity=40, Blast_Score=97, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002579 - InterPro: IPR011057 - InterPro: IPR002569 [H]
Pfam domain/function: PF01625 PMSR; PF01641 SelR [H]
EC number: =1.8.4.12; =1.8.4.11 [H]
Molecular weight: Translated: 34737; Mature: 34737
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLDRDVYMRKLTELEKHVIEQKGTERPFSGEYYQHDAPGVYCCKKCDAPLYRSESKFNA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCC HCGWPAFDDEIEGAVKRNIDADGMRVEIVCAQCDAHLGHVFEGEMLTAKNIRHCVNSVSM CCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEECCCHHCCCCCCCEECHHHHHHHHHHHHH AFKSADELIDKSSGTELATFGGGCFWCIEAVFSAIKGVSKVTSGYAGGTADDANYKAVCS HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC GQTGHAEVVQIEFDPKEVSFERLLEVFWQSHDPTSLNRQGNDVGPQYRSVIFIHDESQAQ CCCCCEEEEEEEECCHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH VANNMIEDLTRVAAWPNPIVTQVVAYNGFFAAENYHNDYFELNGEQPYCQMVIKPKVDKV HHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCEEEECCCCCEEEEEECCCHHHH KALFADRLKK HHHHHHHHCC >Mature Secondary Structure MRLDRDVYMRKLTELEKHVIEQKGTERPFSGEYYQHDAPGVYCCKKCDAPLYRSESKFNA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCC HCGWPAFDDEIEGAVKRNIDADGMRVEIVCAQCDAHLGHVFEGEMLTAKNIRHCVNSVSM CCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEECCCHHCCCCCCCEECHHHHHHHHHHHHH AFKSADELIDKSSGTELATFGGGCFWCIEAVFSAIKGVSKVTSGYAGGTADDANYKAVCS HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC GQTGHAEVVQIEFDPKEVSFERLLEVFWQSHDPTSLNRQGNDVGPQYRSVIFIHDESQAQ CCCCCEEEEEEEECCHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH VANNMIEDLTRVAAWPNPIVTQVVAYNGFFAAENYHNDYFELNGEQPYCQMVIKPKVDKV HHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCEEEECCCCCEEEEEECCCHHHH KALFADRLKK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]