| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622023
Identifier: 167622023
GI number: 167622023
Start: 92692
End: 93087
Strand: Reverse
Name: 167622023
Synonym: Shal_0082
Alternate gene names: NA
Gene position: 93087-92692 (Counterclockwise)
Preceding gene: 167622024
Following gene: 167622022
Centisome position: 1.78
GC content: 41.41
Gene sequence:
>396_bases ATGACAACCCTAACCAGTCAAAGCAACAAAATTACCCTGATCAAATCAGGCTCTTTCGCACTTAATGATTTAAGTCAGTT ATTAAACATCGAAAACCTAAAGAGTGATATGGCTGAAGTTAGTGTCACTAACAACAGCAATGCCCTCACTATTGGCCACT TTACGATGGCACCGGGCACTGAATTTGAGTACTTCTATGATTCTGTAGAATATAAGGTGATCACCAAAGGAAAGATCGTC GTACGTGACACTGATAACATTAAGTATGTAGCTGAAGTCGGTGACGTATTACTCTTCTCTCCAGATGTCACAGTCATTTT TGACGCTGAAAGTGATGGAGAAGCCATCTACACGGCTCACCGTCTAGCTTCTGCTGACTTTGCACCAAAAGCTTAA
Upstream 100 bases:
>100_bases GCGCGTTTGTAATCCGATCTTAAAGCAATCAATACGTTAGCTCACAAGTAACAATGAAGGGAAATCTGCATTTCCCCTCA TTCATTATTCTAGGATCCCT
Downstream 100 bases:
>100_bases TTAAGCACTCGCTTTACTGACACCAACCTAACCCTAACTTAGGGTTGGTGTTTTACGTTCACTAAACCCAGCGACCCCTT TCAGCTCCGATGATAACTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MTTLTSQSNKITLIKSGSFALNDLSQLLNIENLKSDMAEVSVTNNSNALTIGHFTMAPGTEFEYFYDSVEYKVITKGKIV VRDTDNIKYVAEVGDVLLFSPDVTVIFDAESDGEAIYTAHRLASADFAPKA
Sequences:
>Translated_131_residues MTTLTSQSNKITLIKSGSFALNDLSQLLNIENLKSDMAEVSVTNNSNALTIGHFTMAPGTEFEYFYDSVEYKVITKGKIV VRDTDNIKYVAEVGDVLLFSPDVTVIFDAESDGEAIYTAHRLASADFAPKA >Mature_130_residues TTLTSQSNKITLIKSGSFALNDLSQLLNIENLKSDMAEVSVTNNSNALTIGHFTMAPGTEFEYFYDSVEYKVITKGKIVV RDTDNIKYVAEVGDVLLFSPDVTVIFDAESDGEAIYTAHRLASADFAPKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14321; Mature: 14190
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLTSQSNKITLIKSGSFALNDLSQLLNIENLKSDMAEVSVTNNSNALTIGHFTMAPGT CCCCCCCCCEEEEEECCCCCHHHHHHHHCHHHHCCCCEEEEEECCCCEEEEEEEEECCCC EFEYFYDSVEYKVITKGKIVVRDTDNIKYVAEVGDVLLFSPDVTVIFDAESDGEAIYTAH CCEEEECCEEEEEEECCEEEEEECCCEEEEEECCCEEEECCCEEEEEECCCCCCEEEEEE RLASADFAPKA HHCCCCCCCCC >Mature Secondary Structure TTLTSQSNKITLIKSGSFALNDLSQLLNIENLKSDMAEVSVTNNSNALTIGHFTMAPGT CCCCCCCCEEEEEECCCCCHHHHHHHHCHHHHCCCCEEEEEECCCCEEEEEEEEECCCC EFEYFYDSVEYKVITKGKIVVRDTDNIKYVAEVGDVLLFSPDVTVIFDAESDGEAIYTAH CCEEEECCEEEEEEECCEEEEEECCCEEEEEECCCEEEECCCEEEEEECCCCCCEEEEEE RLASADFAPKA HHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA