| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622022
Identifier: 167622022
GI number: 167622022
Start: 91842
End: 92510
Strand: Reverse
Name: 167622022
Synonym: Shal_0081
Alternate gene names: NA
Gene position: 92510-91842 (Counterclockwise)
Preceding gene: 167622023
Following gene: 167622021
Centisome position: 1.77
GC content: 47.23
Gene sequence:
>669_bases ATGTATAAAGCTCTGCGTACCTACATCTCGATTGCATTATTACTATTTTCTATCCCAGCAATAGCTGGAGAAGTGGCGCG CGTCACCTTAGAAAACGGTGCCACGGTCAAACTCAACGACGACTTTAATTGGGAATATGTCATTCTTGAGAGCCAAACCA AACCCGATACCGCGGTGCCAGTCACCTTACCAGCAACTGTCAGTACAGTCGCTGTAGCTGCAAGCACTGCTCCGGTAGAA ACTGAAGCGCTAGCAAAAGTCGAAGCCGTTCCTACGACGCTACCGGCTAATATCGAAACTCTGACCTCAACAGCGATAGC CCAAGCAGAACTTTTAAAGTCGACGGCCAAAAGTGGTGTAAAGGTTAGCTTGCTTAACAGTCAGTGGGATGATGATGGTC GTCTTGGGCTAACTTTTGAGCTTAGCAGCACCAGTCCAGAACACTACGTGATGATCGAGCTAGAGGTCAGTCTGTTTGCC GACTCCGGTGCACTAATTGACAAAGAAACCATCAAGGTATGGCAAGCAATTTTCAGAATGCCGGACTCTTACCTACGTAA AGGCCAGACTCGTGAAAGTCGTACCTTCTGGATTGAAGGCATCGACAAAGCCCAGTGGACTAAAGAGTTGATGAGCCTAA AAATCGGTGAGATGGATTCAAGAATGTAA
Upstream 100 bases:
>100_bases CAGCTCCGATGATAACTACGTCTTATTCTGACTAACACCTGTATTAATCCCGCACGACTTTGTCTATGCTAAGGCAATCA ACTTAAACAGGTTATTTCCC
Downstream 100 bases:
>100_bases TCTCACAAAACAGGTTTAAAGACAGCCGCAAGGGTAACCTCCTTGTGGCTTTTTTCGTTTAAGCGCCTTGTAAAAAGTGG GGAACTATCGATCTGGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MYKALRTYISIALLLFSIPAIAGEVARVTLENGATVKLNDDFNWEYVILESQTKPDTAVPVTLPATVSTVAVAASTAPVE TEALAKVEAVPTTLPANIETLTSTAIAQAELLKSTAKSGVKVSLLNSQWDDDGRLGLTFELSSTSPEHYVMIELEVSLFA DSGALIDKETIKVWQAIFRMPDSYLRKGQTRESRTFWIEGIDKAQWTKELMSLKIGEMDSRM
Sequences:
>Translated_222_residues MYKALRTYISIALLLFSIPAIAGEVARVTLENGATVKLNDDFNWEYVILESQTKPDTAVPVTLPATVSTVAVAASTAPVE TEALAKVEAVPTTLPANIETLTSTAIAQAELLKSTAKSGVKVSLLNSQWDDDGRLGLTFELSSTSPEHYVMIELEVSLFA DSGALIDKETIKVWQAIFRMPDSYLRKGQTRESRTFWIEGIDKAQWTKELMSLKIGEMDSRM >Mature_222_residues MYKALRTYISIALLLFSIPAIAGEVARVTLENGATVKLNDDFNWEYVILESQTKPDTAVPVTLPATVSTVAVAASTAPVE TEALAKVEAVPTTLPANIETLTSTAIAQAELLKSTAKSGVKVSLLNSQWDDDGRLGLTFELSSTSPEHYVMIELEVSLFA DSGALIDKETIKVWQAIFRMPDSYLRKGQTRESRTFWIEGIDKAQWTKELMSLKIGEMDSRM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24375; Mature: 24375
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKALRTYISIALLLFSIPAIAGEVARVTLENGATVKLNDDFNWEYVILESQTKPDTAVP CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCEEEEEEECCCCCCCEEE VTLPATVSTVAVAASTAPVETEALAKVEAVPTTLPANIETLTSTAIAQAELLKSTAKSGV EEECCHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KVSLLNSQWDDDGRLGLTFELSSTSPEHYVMIELEVSLFADSGALIDKETIKVWQAIFRM EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEECCCCEECHHHHHHHHHHHHC PDSYLRKGQTRESRTFWIEGIDKAQWTKELMSLKIGEMDSRM CHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MYKALRTYISIALLLFSIPAIAGEVARVTLENGATVKLNDDFNWEYVILESQTKPDTAVP CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCEEEEEEECCCCCCCEEE VTLPATVSTVAVAASTAPVETEALAKVEAVPTTLPANIETLTSTAIAQAELLKSTAKSGV EEECCHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KVSLLNSQWDDDGRLGLTFELSSTSPEHYVMIELEVSLFADSGALIDKETIKVWQAIFRM EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEECCCCEECHHHHHHHHHHHHC PDSYLRKGQTRESRTFWIEGIDKAQWTKELMSLKIGEMDSRM CHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA