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The map label for this gene is secD [H]

Identifier: 167040102

GI number: 167040102

Start: 1494154

End: 1495389

Strand: Direct

Name: secD [H]

Synonym: Teth514_1462

Alternate gene names: 167040102

Gene position: 1494154-1495389 (Clockwise)

Preceding gene: 167040101

Following gene: 167040103

Centisome position: 60.81

GC content: 35.76

Gene sequence:

>1236_bases
ATGAGAAGTAGAGGTTTTATCAAATTTTTTTCTGTTGTTCTTATTGCAGCAATAGTTGCATATGTAGCATTTTTTGGAAT
AAATGTGGGTAATTACTCTATAAGTCCTGTGCAAAAGCACATAAGATTAGGGCTAGATTTAAGAGGTGGCGTTTATGTAT
TATTAGAAGCTCAGGGGGATGTTACACAAGACGCGATAGATAAAGCGATTGCGGTTATAAAAAACAGGGTGGATGCCCTG
GGTGTAACACAACCTGTGATAGCTCAACAGGGTTCAAATAGAATTCGTGTAGAATTACCTGGTATGAAAGACCCTGACAA
AGCAATAGAAATAATAGGTAAAACTGCTCAATTAAAATTTGTAGGTCCAGATGGACAAGTAATACTAACTGGTGCCAATG
TTAAAGACTCTAAAGCAGTATATGGTCAGAGTCAAACAGGTGTGCAACAACCAGAAGTTACACTTGTACTTGATGCGGAA
GGTACAAAAAAATTTGCAGAAGCAACACAAAAGTTTATAGAGCAACCAATCGCAATACTTTTAGATGATAAGGTAATTTC
CGCTCCAACTGTGCAAAACGTTATCACAAATGGAAATGCAGTCATTACAGGCTTGAAGGATTTCCAAGAAGCATCTGAAT
TAGCTACTCTTATAAGAGCTGGTTCTCTACCTGTTACATTAAAACCAATAGCCTATAGTTCTGTAGGTGCAACTTTAGGC
CCTAGTGCCTATAATGCTAGTGTAAAAGCTGGTATATATGGTGTACTACTTATTTTACTATTTATGGCAGTTTTTTATAG
ATTGCCAGGAGTAATGGCAGATATAGCCCTTTTAATATATATATTGATAGATTTAATAATTTATGCTTTATTTAATATAA
CCTTAGATTTACCAGGGATTGCAGGCTTCCTATTGTCAATTGGTATGGCTGTTGATGCTAATGTTTTAATTTTTGAAAGA
TTTAAAGAAGAACTATGGGCTGGTAAAAGCATAAGAGCTGCTTTAGAGGCAGGTTTTGCAAGGGCCTTCAGAGCCATTTT
TGATGCTAATATGACTACTATTATCGGTGCTATTATACTTTTTTACATGGGCTCTGGAAATGTGAAAGGTTTTGCTTTAA
CACTTCTAATAGGTGTCATATCCAGCTTGTTTACAGCTATAACTGTAACGAGATTTTTGTTGCTTGCACTTGTCGATTTG
GATTTGACAAGAAATATAAAATTTTACGGAGCGTAG

Upstream 100 bases:

>100_bases
GTAGAATTAGCAAAATTACATTTTTCCAACTTTGGGAAATTGACCGTTTACAATAAAAGTAATATAATAGAAAATAGTTG
AATTATGAAGGAGGATTCGA

Downstream 100 bases:

>100_bases
GAGGGAAATTGAGTGAATCAACACAGATTTCATATAGACGTCATTGGTAAAACTAAGATTTGGTTTGCGATATCAGGAAT
TGTAATCTTAATTGGTGTAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MRSRGFIKFFSVVLIAAIVAYVAFFGINVGNYSISPVQKHIRLGLDLRGGVYVLLEAQGDVTQDAIDKAIAVIKNRVDAL
GVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTAQLKFVGPDGQVILTGANVKDSKAVYGQSQTGVQQPEVTLVLDAE
GTKKFAEATQKFIEQPIAILLDDKVISAPTVQNVITNGNAVITGLKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLG
PSAYNASVKAGIYGVLLILLFMAVFYRLPGVMADIALLIYILIDLIIYALFNITLDLPGIAGFLLSIGMAVDANVLIFER
FKEELWAGKSIRAALEAGFARAFRAIFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSLFTAITVTRFLLLALVDL
DLTRNIKFYGA

Sequences:

>Translated_411_residues
MRSRGFIKFFSVVLIAAIVAYVAFFGINVGNYSISPVQKHIRLGLDLRGGVYVLLEAQGDVTQDAIDKAIAVIKNRVDAL
GVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTAQLKFVGPDGQVILTGANVKDSKAVYGQSQTGVQQPEVTLVLDAE
GTKKFAEATQKFIEQPIAILLDDKVISAPTVQNVITNGNAVITGLKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLG
PSAYNASVKAGIYGVLLILLFMAVFYRLPGVMADIALLIYILIDLIIYALFNITLDLPGIAGFLLSIGMAVDANVLIFER
FKEELWAGKSIRAALEAGFARAFRAIFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSLFTAITVTRFLLLALVDL
DLTRNIKFYGA
>Mature_411_residues
MRSRGFIKFFSVVLIAAIVAYVAFFGINVGNYSISPVQKHIRLGLDLRGGVYVLLEAQGDVTQDAIDKAIAVIKNRVDAL
GVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTAQLKFVGPDGQVILTGANVKDSKAVYGQSQTGVQQPEVTLVLDAE
GTKKFAEATQKFIEQPIAILLDDKVISAPTVQNVITNGNAVITGLKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLG
PSAYNASVKAGIYGVLLILLFMAVFYRLPGVMADIALLIYILIDLIIYALFNITLDLPGIAGFLLSIGMAVDANVLIFER
FKEELWAGKSIRAALEAGFARAFRAIFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSLFTAITVTRFLLLALVDL
DLTRNIKFYGA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=378, Percent_Identity=37.3015873015873, Blast_Score=216, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 44064; Mature: 44064

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRGFIKFFSVVLIAAIVAYVAFFGINVGNYSISPVQKHIRLGLDLRGGVYVLLEAQGD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEECCCEEEEEECCCC
VTQDAIDKAIAVIKNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTAQLKF
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEE
VGPDGQVILTGANVKDSKAVYGQSQTGVQQPEVTLVLDAEGTKKFAEATQKFIEQPIAIL
ECCCCCEEEECCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEE
LDDKVISAPTVQNVITNGNAVITGLKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLG
ECCCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCC
PSAYNASVKAGIYGVLLILLFMAVFYRLPGVMADIALLIYILIDLIIYALFNITLDLPGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AGFLLSIGMAVDANVLIFERFKEELWAGKSIRAALEAGFARAFRAIFDANMTTIIGAIIL
HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FYMGSGNVKGFALTLLIGVISSLFTAITVTRFLLLALVDLDLTRNIKFYGA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MRSRGFIKFFSVVLIAAIVAYVAFFGINVGNYSISPVQKHIRLGLDLRGGVYVLLEAQGD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEECCCEEEEEECCCC
VTQDAIDKAIAVIKNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTAQLKF
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEE
VGPDGQVILTGANVKDSKAVYGQSQTGVQQPEVTLVLDAEGTKKFAEATQKFIEQPIAIL
ECCCCCEEEECCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEE
LDDKVISAPTVQNVITNGNAVITGLKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLG
ECCCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCC
PSAYNASVKAGIYGVLLILLFMAVFYRLPGVMADIALLIYILIDLIIYALFNITLDLPGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AGFLLSIGMAVDANVLIFERFKEELWAGKSIRAALEAGFARAFRAIFDANMTTIIGAIIL
HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FYMGSGNVKGFALTLLIGVISSLFTAITVTRFLLLALVDLDLTRNIKFYGA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]