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The map label for this gene is cytC [H]

Identifier: 162149213

GI number: 162149213

Start: 3541602

End: 3542078

Strand: Direct

Name: cytC [H]

Synonym: GDI_3443

Alternate gene names: 162149213

Gene position: 3541602-3542078 (Clockwise)

Preceding gene: 162149212

Following gene: 162149214

Centisome position: 89.79

GC content: 73.17

Gene sequence:

>477_bases
ATGAGGACCACGGCGCGCACCCTGCTGGTCACGCTGGTCCTGGCCGCCGGGCTGTCGCCCCTGGCGGCGGCGGCGGTCGA
CGATCCGTCGGAAATGCTGCCCGACCCGCGCCAGGAAGCCCGGGCCGAGGCGATCGGCGCGCAATTGCGCTGCCTGGTCT
GCCAGAACGAATCGATCGAGGACAGCAGTGCCGGGCTCCTGATCCGCGACCTGCGCCACGTGGTGCGCGATCACGTCGCC
CGGGGTGAGTCCAACCGGCAGATCATGGACTGGATGGTCGGCCGCTACGGCAATTTCATCCGGCTGCGCCCGGCGCTGAC
CATCGGCACCCTCCTGTTGTGGGGCATGCCGGTGCTGGCCCTGCTGGCGGGGATCGGCGCGGCCGCCCTGGCCTTCCGCC
GGTCGCGGGGCACCGCGCCCGCGCCGCTGAGCGACGCCGAACGCGCGCGCCTGACCGACCTGACCGGACCGCGCTGA

Upstream 100 bases:

>100_bases
TGGTCGGGCCGGGCGGCGTGATCCGCTGGCACAGCGCCGCCGCGCTGGACGCCGACACGGTTCGCGGCACGCTGCTGCCC
CTGGCCGCGAGCCTGCATTC

Downstream 100 bases:

>100_bases
GGGGCTTATGATCTGGATTGGCATTTTCCTGCTCAGCACGGTCGTGCTGCTGCCCGCGATCGTCGCGATTCGCCGCACGG
ACCGCCTGACGGATGAACGC

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MRTTARTLLVTLVLAAGLSPLAAAAVDDPSEMLPDPRQEARAEAIGAQLRCLVCQNESIEDSSAGLLIRDLRHVVRDHVA
RGESNRQIMDWMVGRYGNFIRLRPALTIGTLLLWGMPVLALLAGIGAAALAFRRSRGTAPAPLSDAERARLTDLTGPR

Sequences:

>Translated_158_residues
MRTTARTLLVTLVLAAGLSPLAAAAVDDPSEMLPDPRQEARAEAIGAQLRCLVCQNESIEDSSAGLLIRDLRHVVRDHVA
RGESNRQIMDWMVGRYGNFIRLRPALTIGTLLLWGMPVLALLAGIGAAALAFRRSRGTAPAPLSDAERARLTDLTGPR
>Mature_158_residues
MRTTARTLLVTLVLAAGLSPLAAAAVDDPSEMLPDPRQEARAEAIGAQLRCLVCQNESIEDSSAGLLIRDLRHVVRDHVA
RGESNRQIMDWMVGRYGNFIRLRPALTIGTLLLWGMPVLALLAGIGAAALAFRRSRGTAPAPLSDAERARLTDLTGPR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=121, Percent_Identity=41.3223140495868, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790512, Length=90, Percent_Identity=37.7777777777778, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17018; Mature: 17018

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTARTLLVTLVLAAGLSPLAAAAVDDPSEMLPDPRQEARAEAIGAQLRCLVCQNESIE
CCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHEEEEECCCCCC
DSSAGLLIRDLRHVVRDHVARGESNRQIMDWMVGRYGNFIRLRPALTIGTLLLWGMPVLA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHH
LLAGIGAAALAFRRSRGTAPAPLSDAERARLTDLTGPR
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MRTTARTLLVTLVLAAGLSPLAAAAVDDPSEMLPDPRQEARAEAIGAQLRCLVCQNESIE
CCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHEEEEECCCCCC
DSSAGLLIRDLRHVVRDHVARGESNRQIMDWMVGRYGNFIRLRPALTIGTLLLWGMPVLA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHH
LLAGIGAAALAFRRSRGTAPAPLSDAERARLTDLTGPR
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]