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The map label for this gene is cycH [H]

Identifier: 162149214

GI number: 162149214

Start: 3542086

End: 3542805

Strand: Direct

Name: cycH [H]

Synonym: GDI_3444

Alternate gene names: 162149214

Gene position: 3542086-3542805 (Clockwise)

Preceding gene: 162149213

Following gene: 162149215

Centisome position: 89.81

GC content: 73.75

Gene sequence:

>720_bases
ATGATCTGGATTGGCATTTTCCTGCTCAGCACGGTCGTGCTGCTGCCCGCGATCGTCGCGATTCGCCGCACGGACCGCCT
GACGGATGAACGCGCATCCGCCCTGCTGCTGCATTACGCGCAACTGGCCGAACTGGACCGCGACCGGCAGGACGGGCTGA
TCGCGGACAGCGAACATCTGGGCGCCGTGCTGGAAGTCCAGCGGCGGCTGCTGGCCACCGACGCGGCGCCGGCACGGAGC
CTGGGCCGCGCGGCGAGGGTGCCGGCCGTCGTGGTGGCGCTGCTGCTGATCCCGGCTTCGGCGGTGGGGCTGTACCTGCT
CTGCGGCCATCCGGCGCTGCCGGCCCAGCCCCTGGCGCCGCGCCTGGCCGCCCTGCATGCCCAGGACCATCGCGACGACG
CGCTGCTGGCGGAACTGCGCACCGGCCTGGCCCGCATGGCCCCCGACGACCCCAACCGCTTCCGGGGGTACCTGCTGCTG
GGCCAGGCGGAAGCCGCCCGCATGCATTACGCCGACGCCGCCGAGGCCTGGCGGCAGGCGACCGCCATCCAGTTCATCCC
CGAAATCGCGGCCCGCGCGGCCGAGGCCCAGACCCTGGCGGACGGACGGGTCTCGTCCGACAGCGCCGCGCTGTTCCGCC
GCGCGCTGGACGGCGCCCCGGCCGACGCGCCGTGGCGCATGGCGGCGGAACAGCGGATCGCCCAGTCGGAGCACCAGTAA

Upstream 100 bases:

>100_bases
GCCCTGGCCTTCCGCCGGTCGCGGGGCACCGCGCCCGCGCCGCTGAGCGACGCCGAACGCGCGCGCCTGACCGACCTGAC
CGGACCGCGCTGAGGGGCTT

Downstream 100 bases:

>100_bases
CCCGCCATGATCGAACCCGTCCCCAGCAGCGTCGAGCAATGTCCGTTCTGCCACCGGACCATTCGCGGCACGACCGAGAC
CTGCCCCCATTGCGGGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIWIGIFLLSTVVLLPAIVAIRRTDRLTDERASALLLHYAQLAELDRDRQDGLIADSEHLGAVLEVQRRLLATDAAPARS
LGRAARVPAVVVALLLIPASAVGLYLLCGHPALPAQPLAPRLAALHAQDHRDDALLAELRTGLARMAPDDPNRFRGYLLL
GQAEAARMHYADAAEAWRQATAIQFIPEIAARAAEAQTLADGRVSSDSAALFRRALDGAPADAPWRMAAEQRIAQSEHQ

Sequences:

>Translated_239_residues
MIWIGIFLLSTVVLLPAIVAIRRTDRLTDERASALLLHYAQLAELDRDRQDGLIADSEHLGAVLEVQRRLLATDAAPARS
LGRAARVPAVVVALLLIPASAVGLYLLCGHPALPAQPLAPRLAALHAQDHRDDALLAELRTGLARMAPDDPNRFRGYLLL
GQAEAARMHYADAAEAWRQATAIQFIPEIAARAAEAQTLADGRVSSDSAALFRRALDGAPADAPWRMAAEQRIAQSEHQ
>Mature_239_residues
MIWIGIFLLSTVVLLPAIVAIRRTDRLTDERASALLLHYAQLAELDRDRQDGLIADSEHLGAVLEVQRRLLATDAAPARS
LGRAARVPAVVVALLLIPASAVGLYLLCGHPALPAQPLAPRLAALHAQDHRDDALLAELRTGLARMAPDDPNRFRGYLLL
GQAEAARMHYADAAEAWRQATAIQFIPEIAARAAEAQTLADGRVSSDSAALFRRALDGAPADAPWRMAAEQRIAQSEHQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25826; Mature: 25826

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWIGIFLLSTVVLLPAIVAIRRTDRLTDERASALLLHYAQLAELDRDRQDGLIADSEHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
GAVLEVQRRLLATDAAPARSLGRAARVPAVVVALLLIPASAVGLYLLCGHPALPAQPLAP
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHH
RLAALHAQDHRDDALLAELRTGLARMAPDDPNRFRGYLLLGQAEAARMHYADAAEAWRQA
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHEEEEEEECHHHHHHHHHHHHHHHHHH
TAIQFIPEIAARAAEAQTLADGRVSSDSAALFRRALDGAPADAPWRMAAEQRIAQSEHQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIWIGIFLLSTVVLLPAIVAIRRTDRLTDERASALLLHYAQLAELDRDRQDGLIADSEHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
GAVLEVQRRLLATDAAPARSLGRAARVPAVVVALLLIPASAVGLYLLCGHPALPAQPLAP
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHH
RLAALHAQDHRDDALLAELRTGLARMAPDDPNRFRGYLLLGQAEAARMHYADAAEAWRQA
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHEEEEEEECHHHHHHHHHHHHHHHHHH
TAIQFIPEIAARAAEAQTLADGRVSSDSAALFRRALDGAPADAPWRMAAEQRIAQSEHQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]