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The map label for this gene is rnfB [H]

Identifier: 161870852

GI number: 161870852

Start: 1993606

End: 1994445

Strand: Direct

Name: rnfB [H]

Synonym: NMCC_1939

Alternate gene names: 161870852

Gene position: 1993606-1994445 (Clockwise)

Preceding gene: 161870851

Following gene: 161870854

Centisome position: 92.58

GC content: 63.81

Gene sequence:

>840_bases
ATGACCGCCACAGCCGCCGCCATAGACCGCCTGCTTCCCCAAACCCAATGCCGCGAATGCGGCTACGACGGCTGCCTGCC
CTACGCACAGGCAGTCGCAACAGGCGAAGCGTACAACCTCTGCGCCCCGGGCGGAGAAGCCGTCATTCGGGACATTTCCG
CCCTGCTCGGCAAACCCCTTGTCGCACCTGCCAAAACCCAAGCCAAAGCACTCGCCCGGATAGACGAAACCGCCTGTATC
GGCTGCACCGCCTGCATCCGCGTCTGCCCTGCCGATGCCATTATGGGCGCGGGCAAACTTATGCACACCGTCATCGCCGA
CGAATGCACCGGCTGCGGACTCTGCGTCGCCCCCTGCCCCGTCGACTGCATCCATATGCAGCCCGTTGCCGACACCGTCC
TGCCCCGCGCGCGCCGCTTCAGCCTGTCCGCCGACAGCCGTTTTGCCGCCGCCGAACACGCGCGCGCGCGCTACCTCAAA
CGCAACGAACGCAAACAGCGCGAAGCCGACGAACGCAAGGCCATGCTTGCCGAACGCGAAGCCGCCGTCCGTAACGCGCG
TCCGCAAACGCCCGACACACCGAAAAAACCGGCGTTTAACCCTGCCGACCTCATCGCCAAAGCCATGGCAAAAGCGCAAA
CCCAACAAGACCGCCTCGCCGCCGCCGACAACCGCAAAGACTATCAGGCGAAACAGATAGCCGAAGCCCGCGAACGCGCC
GAGTTGCGCCGCGCCCAACGCGATATGAAATACGGCAGCGACAGCGAAAAAGCCGCCGCCCTCGAATACCTCAAACAATA
CAAAGCCAAACAGGAAGCCGCACAAAACACCGCCTCCTGA

Upstream 100 bases:

>100_bases
ACGCCGCCGTATTATAACAAAACACCGCGCACCATCCGAAACGGGCGCGGCATACAATTCTGCTAAAATACGCCCTTTCG
ATTTTGAGCCGCACACCGAC

Downstream 100 bases:

>100_bases
CCCTTCCCTGATATGCCGTCTGAAAACCGTTTCAGACGGCATTTTATCAAGCTCTCCGTCCGCCGCACCCGTGCCGTCCG
CATCTTACCGCCCACCCTTC

Product: ferredoxin, 4Fe-4S type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPGGEAVIRDISALLGKPLVAPAKTQAKALARIDETACI
GCTACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLK
RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDRLAAADNRKDYQAKQIAEARERA
ELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQNTAS

Sequences:

>Translated_279_residues
MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPGGEAVIRDISALLGKPLVAPAKTQAKALARIDETACI
GCTACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLK
RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDRLAAADNRKDYQAKQIAEARERA
ELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQNTAS
>Mature_278_residues
TATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPGGEAVIRDISALLGKPLVAPAKTQAKALARIDETACIG
CTACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLKR
NERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDRLAAADNRKDYQAKQIAEARERAE
LRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQNTAS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=153, Percent_Identity=52.2875816993464, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 30209; Mature: 30078

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPGGEAVIRDISALLGKPL
CCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
VAPAKTQAKALARIDETACIGCTACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
VDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLKRNERKQREADERKAMLAERE
CCHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDRLAAADNRKDYQAKQIAEARERA
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQNTAS
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPGGEAVIRDISALLGKPL
CCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
VAPAKTQAKALARIDETACIGCTACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
VDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLKRNERKQREADERKAMLAERE
CCHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDRLAAADNRKDYQAKQIAEARERA
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQNTAS
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA