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The map label for this gene is clpS [H]

Identifier: 161869772

GI number: 161869772

Start: 807229

End: 807690

Strand: Reverse

Name: clpS [H]

Synonym: NMCC_0795

Alternate gene names: 161869772

Gene position: 807690-807229 (Counterclockwise)

Preceding gene: 161869774

Following gene: 161869771

Centisome position: 37.51

GC content: 47.62

Gene sequence:

>462_bases
TTGATATACTCGGCGGATGCCCAATCCTGCTTAACCGTCTTTTTACATTTGTTAAGACAAAACGTCAAGCTATGTTTTCA
AAAAAGTGGGAAAATAGGCAAAAGTACCGAAAATACAACAAAAATGCCGTCTGAACGCGGCTTTCAAATGGGACACACTA
TGACCGCGCAACACCAATCCGACACGCTCTTGCACCGTCTGAACACCCTGCCGCCGAAACGTTACGGCGTTTTCCTATTG
AACGACGATTACACCACGATGGAATTTGTCGTTGAAATCCTGACCGAAATCTTCATGCTCGGACAAGAACAGGCGGTAGC
GGTAATGCTCTTGGTTCATCACGAAGGCAAAGGCCTGTGCGGCACTTACACGCGCGATATTGCCCAAACCAAACAGCAAC
AAGTCATGCAGCGGGCAAAAGCCGAAGGGCATCCGCTGCAATGTATTGTCGAGGAGATTTAA

Upstream 100 bases:

>100_bases
ACGATACCGGTTGCCATTAGAAACTTCCTATACTCAAAAATTAACAAAATCAGCAAAACAAGGCATACGGCAAACCGAGC
CGTCTGGCGTTCCTTCCAGC

Downstream 100 bases:

>100_bases
TATGCTTGCACCCGAATTGGAACAGATTTTGCAGCAGCTTTACCGCGAGGCGCGTAAGGCTCATTATGAATTTATCAGCC
TCGAGCATCTGCTTTTGGTA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MIYSADAQSCLTVFLHLLRQNVKLCFQKSGKIGKSTENTTKMPSERGFQMGHTMTAQHQSDTLLHRLNTLPPKRYGVFLL
NDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI

Sequences:

>Translated_153_residues
MIYSADAQSCLTVFLHLLRQNVKLCFQKSGKIGKSTENTTKMPSERGFQMGHTMTAQHQSDTLLHRLNTLPPKRYGVFLL
NDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI
>Mature_153_residues
MIYSADAQSCLTVFLHLLRQNVKLCFQKSGKIGKSTENTTKMPSERGFQMGHTMTAQHQSDTLLHRLNTLPPKRYGVFLL
NDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=82, Percent_Identity=45.1219512195122, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 17356; Mature: 17356

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSADAQSCLTVFLHLLRQNVKLCFQKSGKIGKSTENTTKMPSERGFQMGHTMTAQHQS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
DTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLC
HHHHHHHHCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCC
GTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MIYSADAQSCLTVFLHLLRQNVKLCFQKSGKIGKSTENTTKMPSERGFQMGHTMTAQHQS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
DTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLC
HHHHHHHHCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCC
GTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA