Definition | Shewanella baltica OS195 chromosome, complete genome. |
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Accession | NC_009997 |
Length | 5,347,283 |
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The map label for this gene is pflB [H]
Identifier: 160875880
GI number: 160875880
Start: 3298336
End: 3300618
Strand: Direct
Name: pflB [H]
Synonym: Sbal195_2769
Alternate gene names: 160875880
Gene position: 3298336-3300618 (Clockwise)
Preceding gene: 160875878
Following gene: 160875881
Centisome position: 61.68
GC content: 46.61
Gene sequence:
>2283_bases ATGACCGAAAAAACTGAACTGTTTGCCAACGCATGGGAAGGCTTTACCCCTGGCGATTGGAAATCTGAAGTCAATGTACG TGACTTTATCCAACAAAACTACGCGCCTTTTGAAGGCGACGAATCATTCCTTGCCGGTGCCACCGAAGCGACCACAACCC TGTGGGATAAAGTCATGGAAGGCATCAAACAGGAAAACCGTACCCACGCGCCTGTTGATTTCGATACTAAGATGGTTTCT ACCATCACTTCCCACGACGCTGGCTACATCAACAAAGAATTAGAAACTATCGTTGGCTTACAAACAGATGCGCCGCTAAA ACGCGCTATGTTGCCTAACGGTGGTATTCGTATGGTGGAAAGCTCATGCGCTGCCTACGACCGCGTGCTAGATGAAGACG TTAAATACATCTATTCAGAACTGCGTAAAACCCATAACCAAGGTGTATTCGATGTTTACACCCCAGAAATTATGGCTTGC CGTAAATCAGGTATTTTAACCGGTTTACCTGATGCTTATGGCCGTGGCCGTATCATTGGTGACTATCGCCGTGTTGCACT TTACGGTATCGATTACCTGATGAAAGATAAGTTTGCCCAATTCACTTCACTGCAAGCGCAGTTCGAAGCGGGTGAAGAAT TATCAAATGTTATCCAATTACGTGAAGAAATCGCTGAGCAACACCGTGCACTAGGTCAAATGAAGAAAATGGCTGCCAAA TATGGCTGCGATATTTCTCGCCCAGCAACCACTGCACAAGAAGCTATTCAATGGACTTACTTCGGTTACTTAGCCGCAGT GAAAAGCCAAAACGGCGCGGCGATGTCATTAGGCCGTACCTCTTCATTCCTCGACATCTATATTGAACGCGATCTGAAAA ATGGCACCTTAACTGAGCAACAAGCTCAGGAAATGATTGACCATTTCGTGATGAAACTGCGTATGGTACGTTTCCTACGT ACTCCAGAATACGATGAATTGTTCTCTGGCGACCCAATTTGGGCGACTGAGTCAATTGGCGGTATGGGCTTAGATGGCCG TACGTTAGTGACTAAATCAAGCTTCCGTTTCTTGAATACCCTTTACACTATGGGTCCAAGTCCAGAGCCAAACATCACAG TATTGTGGTCAGATAAACTGCCCATCGGCTTCAAAAAATATTGCGCCAAAGTGTCTATCGACACTAGCTCAATCCAATAT GAAAACGATGACCTAATGCGTCCAGATTTCCAATCAGACGACTATGCTATTGCCTGTTGTGTAAGCCCAATGGTTGTGGG TAAACACATGCAGTTCTTCGGTGCCCGCGCCAACTTAGCTAAAACTATGTTGTATGCGATTAACGGCGGCGTTGACGAAA AGCTGAAAATCCAAGTTGCCCCTAAAGCCGACCCTATCACTGACGCCGTATTAAACTACGACGACGTGATGAATCGCTTA GACGGTTTAATGGATTGGTTAGCGACTCAATATGTCACAGCACTGAACTCAATCCACTTCATGCACGACAAGTACTCTTA CGAAGCCGCGCTAATGGCACTGCACGATAGAGACGTACGTCGCACTATGGCTTGTGGTATTGCGGGTCTGTCTATCGCAG CCGACTCACTGTCTGCCATTAAATTCGCCACAGTAAAACCTGTTCGTGATGAAAACGGCATTGCAGTTGATTTCGAAATT AGCGGTGACTATCCAAAATTTGGTAACAACGACCCACGTGTTGATGATATCGCCTGTGATTTAGTTGAACGTTTTATGGC GAAAATTCGCGACCGTAAAATGTATCGCAATGCGATCCCAACTCAGTCAATTCTGACCATCACCTCAAACGTGGTTTATG GTAAGAAAACCGGTAACACACCAGATGGTCGTCGTTCAGGTGCGCCATTTGCACCGGGTGCAAACCCTATGCATGGCCGT GATGAAAAAGGCGCAATCGCTTCTTTAACCTCAGTGGCAAAACTCCCATTTGCCCACGCTCAAGATGGTATCTCTTATAC CTTCTCAATCGTGCCAAATGCCCTGGGTAAAGATGATGATGCTCGCCGTACCAACTTAGCGGCATTGATGGACGGATACT TCGACCACAATGACAAAAAAGAAGGTGGCCAACACTTGAACGTCAACGTGATGAACCGCGAGATGCTCGAAGATGCCGTT AAGCATCCAGACAAGTATCCACAGCTGACCATCCGTGTTTCTGGCTACGCAGTGCGCTTCAACTCACTGACGCCAGAGCA GCAACAAGATGTGATCACGCGTACATTCACCAAAGGTCTGTAA
Upstream 100 bases:
>100_bases GAAGGGAGCTTTATTTCAGGAATTAGCTATTGGCTTATACTCAGCATCGCTTCACGCTGATCGCCAATAACCTTTATCTC AACCAGAAGGTATTAGTACG
Downstream 100 bases:
>100_bases GCTAAATTAGTCAAGGCTGTAGTACACTGTGCTACAGCCTCACTTATTTTAACAGGAGTCACAATGGCAGTTATCGGTCG GATCCACTCGGTGGAATCCT
Product: formate acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase 1 [H]
Number of amino acids: Translated: 760; Mature: 759
Protein sequence:
>760_residues MTEKTELFANAWEGFTPGDWKSEVNVRDFIQQNYAPFEGDESFLAGATEATTTLWDKVMEGIKQENRTHAPVDFDTKMVS TITSHDAGYINKELETIVGLQTDAPLKRAMLPNGGIRMVESSCAAYDRVLDEDVKYIYSELRKTHNQGVFDVYTPEIMAC RKSGILTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQAQFEAGEELSNVIQLREEIAEQHRALGQMKKMAAK YGCDISRPATTAQEAIQWTYFGYLAAVKSQNGAAMSLGRTSSFLDIYIERDLKNGTLTEQQAQEMIDHFVMKLRMVRFLR TPEYDELFSGDPIWATESIGGMGLDGRTLVTKSSFRFLNTLYTMGPSPEPNITVLWSDKLPIGFKKYCAKVSIDTSSIQY ENDDLMRPDFQSDDYAIACCVSPMVVGKHMQFFGARANLAKTMLYAINGGVDEKLKIQVAPKADPITDAVLNYDDVMNRL DGLMDWLATQYVTALNSIHFMHDKYSYEAALMALHDRDVRRTMACGIAGLSIAADSLSAIKFATVKPVRDENGIAVDFEI SGDYPKFGNNDPRVDDIACDLVERFMAKIRDRKMYRNAIPTQSILTITSNVVYGKKTGNTPDGRRSGAPFAPGANPMHGR DEKGAIASLTSVAKLPFAHAQDGISYTFSIVPNALGKDDDARRTNLAALMDGYFDHNDKKEGGQHLNVNVMNREMLEDAV KHPDKYPQLTIRVSGYAVRFNSLTPEQQQDVITRTFTKGL
Sequences:
>Translated_760_residues MTEKTELFANAWEGFTPGDWKSEVNVRDFIQQNYAPFEGDESFLAGATEATTTLWDKVMEGIKQENRTHAPVDFDTKMVS TITSHDAGYINKELETIVGLQTDAPLKRAMLPNGGIRMVESSCAAYDRVLDEDVKYIYSELRKTHNQGVFDVYTPEIMAC RKSGILTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQAQFEAGEELSNVIQLREEIAEQHRALGQMKKMAAK YGCDISRPATTAQEAIQWTYFGYLAAVKSQNGAAMSLGRTSSFLDIYIERDLKNGTLTEQQAQEMIDHFVMKLRMVRFLR TPEYDELFSGDPIWATESIGGMGLDGRTLVTKSSFRFLNTLYTMGPSPEPNITVLWSDKLPIGFKKYCAKVSIDTSSIQY ENDDLMRPDFQSDDYAIACCVSPMVVGKHMQFFGARANLAKTMLYAINGGVDEKLKIQVAPKADPITDAVLNYDDVMNRL DGLMDWLATQYVTALNSIHFMHDKYSYEAALMALHDRDVRRTMACGIAGLSIAADSLSAIKFATVKPVRDENGIAVDFEI SGDYPKFGNNDPRVDDIACDLVERFMAKIRDRKMYRNAIPTQSILTITSNVVYGKKTGNTPDGRRSGAPFAPGANPMHGR DEKGAIASLTSVAKLPFAHAQDGISYTFSIVPNALGKDDDARRTNLAALMDGYFDHNDKKEGGQHLNVNVMNREMLEDAV KHPDKYPQLTIRVSGYAVRFNSLTPEQQQDVITRTFTKGL >Mature_759_residues TEKTELFANAWEGFTPGDWKSEVNVRDFIQQNYAPFEGDESFLAGATEATTTLWDKVMEGIKQENRTHAPVDFDTKMVST ITSHDAGYINKELETIVGLQTDAPLKRAMLPNGGIRMVESSCAAYDRVLDEDVKYIYSELRKTHNQGVFDVYTPEIMACR KSGILTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQAQFEAGEELSNVIQLREEIAEQHRALGQMKKMAAKY GCDISRPATTAQEAIQWTYFGYLAAVKSQNGAAMSLGRTSSFLDIYIERDLKNGTLTEQQAQEMIDHFVMKLRMVRFLRT PEYDELFSGDPIWATESIGGMGLDGRTLVTKSSFRFLNTLYTMGPSPEPNITVLWSDKLPIGFKKYCAKVSIDTSSIQYE NDDLMRPDFQSDDYAIACCVSPMVVGKHMQFFGARANLAKTMLYAINGGVDEKLKIQVAPKADPITDAVLNYDDVMNRLD GLMDWLATQYVTALNSIHFMHDKYSYEAALMALHDRDVRRTMACGIAGLSIAADSLSAIKFATVKPVRDENGIAVDFEIS GDYPKFGNNDPRVDDIACDLVERFMAKIRDRKMYRNAIPTQSILTITSNVVYGKKTGNTPDGRRSGAPFAPGANPMHGRD EKGAIASLTSVAKLPFAHAQDGISYTFSIVPNALGKDDDARRTNLAALMDGYFDHNDKKEGGQHLNVNVMNREMLEDAVK HPDKYPQLTIRVSGYAVRFNSLTPEQQQDVITRTFTKGL
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1787131, Length=760, Percent_Identity=81.8421052631579, Blast_Score=1337, Evalue=0.0, Organism=Escherichia coli, GI48994926, Length=755, Percent_Identity=75.4966887417219, Blast_Score=1231, Evalue=0.0, Organism=Escherichia coli, GI1787044, Length=595, Percent_Identity=27.8991596638655, Blast_Score=189, Evalue=6e-49, Organism=Escherichia coli, GI1790388, Length=665, Percent_Identity=24.3609022556391, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1788933, Length=60, Percent_Identity=86.6666666666667, Blast_Score=115, Evalue=1e-26,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005949 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 84907; Mature: 84776
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKTELFANAWEGFTPGDWKSEVNVRDFIQQNYAPFEGDESFLAGATEATTTLWDKVME CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH GIKQENRTHAPVDFDTKMVSTITSHDAGYINKELETIVGLQTDAPLKRAMLPNGGIRMVE HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHH SSCAAYDRVLDEDVKYIYSELRKTHNQGVFDVYTPEIMACRKSGILTGLPDAYGRGRIIG HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEH DYRRVALYGIDYLMKDKFAQFTSLQAQFEAGEELSNVIQLREEIAEQHRALGQMKKMAAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGCDISRPATTAQEAIQWTYFGYLAAVKSQNGAAMSLGRTSSFLDIYIERDLKNGTLTEQ HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCCCCCHH QAQEMIDHFVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKSSFRFLNT HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCCEEEEHHHHHHHHH LYTMGPSPEPNITVLWSDKLPIGFKKYCAKVSIDTSSIQYENDDLMRPDFQSDDYAIACC HHHCCCCCCCCEEEEECCCCCCCHHHHHHEEEECCCCEEECCCCCCCCCCCCCCCEEEEE VSPMVVGKHMQFFGARANLAKTMLYAINGGVDEKLKIQVAPKADPITDAVLNYDDVMNRL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHCHHHHHHHH DGLMDWLATQYVTALNSIHFMHDKYSYEAALMALHDRDVRRTMACGIAGLSIAADSLSAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHE KFATVKPVRDENGIAVDFEISGDYPKFGNNDPRVDDIACDLVERFMAKIRDRKMYRNAIP EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC TQSILTITSNVVYGKKTGNTPDGRRSGAPFAPGANPMHGRDEKGAIASLTSVAKLPFAHA CHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHC QDGISYTFSIVPNALGKDDDARRTNLAALMDGYFDHNDKKEGGQHLNVNVMNREMLEDAV CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHH KHPDKYPQLTIRVSGYAVRFNSLTPEQQQDVITRTFTKGL HCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TEKTELFANAWEGFTPGDWKSEVNVRDFIQQNYAPFEGDESFLAGATEATTTLWDKVME CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH GIKQENRTHAPVDFDTKMVSTITSHDAGYINKELETIVGLQTDAPLKRAMLPNGGIRMVE HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHH SSCAAYDRVLDEDVKYIYSELRKTHNQGVFDVYTPEIMACRKSGILTGLPDAYGRGRIIG HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEH DYRRVALYGIDYLMKDKFAQFTSLQAQFEAGEELSNVIQLREEIAEQHRALGQMKKMAAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGCDISRPATTAQEAIQWTYFGYLAAVKSQNGAAMSLGRTSSFLDIYIERDLKNGTLTEQ HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEECCCCCCCCHH QAQEMIDHFVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKSSFRFLNT HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCCEEEEHHHHHHHHH LYTMGPSPEPNITVLWSDKLPIGFKKYCAKVSIDTSSIQYENDDLMRPDFQSDDYAIACC HHHCCCCCCCCEEEEECCCCCCCHHHHHHEEEECCCCEEECCCCCCCCCCCCCCCEEEEE VSPMVVGKHMQFFGARANLAKTMLYAINGGVDEKLKIQVAPKADPITDAVLNYDDVMNRL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHCHHHHHHHH DGLMDWLATQYVTALNSIHFMHDKYSYEAALMALHDRDVRRTMACGIAGLSIAADSLSAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHE KFATVKPVRDENGIAVDFEISGDYPKFGNNDPRVDDIACDLVERFMAKIRDRKMYRNAIP EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC TQSILTITSNVVYGKKTGNTPDGRRSGAPFAPGANPMHGRDEKGAIASLTSVAKLPFAHA CHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHC QDGISYTFSIVPNALGKDDDARRTNLAALMDGYFDHNDKKEGGQHLNVNVMNREMLEDAV CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHH KHPDKYPQLTIRVSGYAVRFNSLTPEQQQDVITRTFTKGL HCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3053170; 8905232; 9278503; 2651404; 1310545; 9629924; 10504733 [H]