| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is tal [H]
Identifier: 160874265
GI number: 160874265
Start: 1356652
End: 1357608
Strand: Reverse
Name: tal [H]
Synonym: Sbal195_1145
Alternate gene names: 160874265
Gene position: 1357608-1356652 (Counterclockwise)
Preceding gene: 160874266
Following gene: 160874264
Centisome position: 25.39
GC content: 45.35
Gene sequence:
>957_bases ATGGCCAATACATTAGAGCAACTCAAGTTATATACCACTATCGTCGCTGACACAGGCGACATCGAAGCGATTAAACGCTA CCAACCTGAAGATGCGACAACCAATCCATCGCTCATCTTGAAAGCGGCTCAAATTCCTGAATACGAATCCCTCATTGATA ACGCTATCGACTGGGCAAAATCACAAAGTGACGATCTCGCGCAGCAACTTGATGATGCCAGCGACAAGCTCGCCGTTAAT ATCGGTGTAGAAATACTGAAACTCGTTCCTGGTCGTATCTCTACTGAAGTCGATGCCCGTTTATCATTCGATAAAGAACA ATCAATCGCTAAAGCCCATAAGCTGGTTCGCCTCTACAAAGAAGCGGGCGTTGATAAGTCACGTATTCTGATCAAACTCG CTTCAACTTGGGAAGGCATTTGTGCAGCTAGAGAGCTGGAGAAAGAAGGCATCAACTGTAACTTAACCCTACTATTTAGC TTTGCCCAAGCACGTGCTTGTGCCGAAGCGGGTGCTTATCTGATTTCGCCTTTTGTTGGCCGCATTCTTGATTGGTACAA AAAAGATACAGGTAAAGACTACGATGCCGTAAATGACCCAGGTGTCATTTCTGTTACCGAAATCTATAATTATTACAAAC AGCATGGTTTTAATACTGTCGTTATGGGTGCAAGTTTCCGTAATATCGGTGAAATCATCGAACTAGCAGGCTGCGATCGT CTCACAATTGGCCCTTCTCTGTTAGAAGAACTGGCTAATTCGCAAGTCGACATTACCCCTAAACTGGTTGCAGCAACCAG CACTGTTGCTGCCGAAGCCCCATTGACAGAAGCGCAATTCCGTTGGGACTTTAACCAAGATCCAATGGCTGTAGATAAGC TTGCGGAAGGTATTCGAAACTTTGCCATAGACCAAGGCAAACTCGAAGTGATGCTCACGGCTAAGCTCGCAAACTAA
Upstream 100 bases:
>100_bases TAATTTTTTTACATTCAAGGTTGGAAAAGTTGGCAAAATCGCTTCTAATAGTCATCAGTGAATTCCGAGTTAAGACTGCT ACCTGAGAAGGATGTTTTTC
Downstream 100 bases:
>100_bases GCATTCTGGAGACAGTGAGATGACACTCTTGACCCAAAGCTCAACATGGCAAGCTTTATCAGCACACAGTAAAAATGTGC CGCATATGCGGGAATTGTTT
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAKSQSDDLAQQLDDASDKLAVN IGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYKEAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFS FAQARACAEAGAYLISPFVGRILDWYKKDTGKDYDAVNDPGVISVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR LTIGPSLLEELANSQVDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRNFAIDQGKLEVMLTAKLAN
Sequences:
>Translated_318_residues MANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAKSQSDDLAQQLDDASDKLAVN IGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYKEAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFS FAQARACAEAGAYLISPFVGRILDWYKKDTGKDYDAVNDPGVISVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR LTIGPSLLEELANSQVDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRNFAIDQGKLEVMLTAKLAN >Mature_317_residues ANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAKSQSDDLAQQLDDASDKLAVNI GVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYKEAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFSF AQARACAEAGAYLISPFVGRILDWYKKDTGKDYDAVNDPGVISVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDRL TIGPSLLEELANSQVDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRNFAIDQGKLEVMLTAKLAN
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI5803187, Length=322, Percent_Identity=58.3850931677019, Blast_Score=372, Evalue=1e-103, Organism=Escherichia coli, GI1786189, Length=313, Percent_Identity=71.5654952076677, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI1788807, Length=315, Percent_Identity=64.4444444444444, Blast_Score=414, Evalue=1e-117, Organism=Caenorhabditis elegans, GI25153750, Length=319, Percent_Identity=53.9184952978056, Blast_Score=336, Evalue=9e-93, Organism=Caenorhabditis elegans, GI25153752, Length=166, Percent_Identity=51.8072289156626, Blast_Score=172, Evalue=2e-43, Organism=Caenorhabditis elegans, GI17570473, Length=98, Percent_Identity=45.9183673469388, Blast_Score=84, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6321480, Length=308, Percent_Identity=53.2467532467532, Blast_Score=331, Evalue=7e-92, Organism=Saccharomyces cerevisiae, GI6323386, Length=308, Percent_Identity=56.8181818181818, Blast_Score=326, Evalue=3e-90, Organism=Drosophila melanogaster, GI45549185, Length=318, Percent_Identity=58.8050314465409, Blast_Score=371, Evalue=1e-103,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 34966; Mature: 34835
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS01054 TRANSALDOLASE_1 ; PS00958 TRANSALDOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAK CCCHHHHHHHHHHEEECCCCHHHHHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHC SQSDDLAQQLDDASDKLAVNIGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYK CCCHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHH EAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFSFAQARACAEAGAYLISPFVG HHCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHH RILDWYKKDTGKDYDAVNDPGVISVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR HHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCC LTIGPSLLEELANSQVDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRN EEECHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHH FAIDQGKLEVMLTAKLAN HCCCCCCEEEEEEEEECC >Mature Secondary Structure ANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAK CCHHHHHHHHHHEEECCCCHHHHHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHC SQSDDLAQQLDDASDKLAVNIGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYK CCCHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHH EAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFSFAQARACAEAGAYLISPFVG HHCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHH RILDWYKKDTGKDYDAVNDPGVISVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR HHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCC LTIGPSLLEELANSQVDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRN EEECHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHH FAIDQGKLEVMLTAKLAN HCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA