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The map label for this gene is xylR [H]

Identifier: 159901074

GI number: 159901074

Start: 5838866

End: 5840110

Strand: Direct

Name: xylR [H]

Synonym: Haur_4562

Alternate gene names: 159901074

Gene position: 5838866-5840110 (Clockwise)

Preceding gene: 159901072

Following gene: 159901075

Centisome position: 92.0

GC content: 51.57

Gene sequence:

>1245_bases
ATGAATCGTCCTTCGGCATTGACAGCTGATCTGAGTTTGATGCGAGAACTCAACCGCGCCCTGGTACTCCAGTTAATTCG
GCGTGAAGGACGGATTTCGCGGGCAGATATCGCCAAGCACACCAAGTTAAGTCGTTCGACCGTTTCAAGCATCATTAACG
ATCTGATTGACGCAAGCCTTGTTACGGAAACGGGTATTGGTACCTCAAAAGGTGGCCGACGGCCAATTATCCTCGAATTC
AATTATCAAGCCAATTATATTATTGGGCTTGATGTTTCGCGCAACGCCGTTAGCGCCGTTATTACCGATTTGAACGCCCG
AATCTGTTCACGCCGTCAAATTTCCTTCAATGTTAACGACGGCCCCACCGTTGGCATGCCGCTGATCAAACAATTGATTA
GCACGATGCTGACCGAATCGCCGGTTGGTCGTGGCCGCATTAGTGCAATTGGAGTTGGCGTGCCTGGCCCATTGGATTTT
CGCAATGGCCGCACAATTGCCCCGCCAGTTATGCCTGGTTGGGATAACGTGCCAATTCGCGAAGAGTTAAGCCAAACCTT
CCGTTTGCCCGTATCAATTGATAACGATGCCAACTTGGCCGCGATGGCCGAGTATCGTTGGGGCGCAGGCCAAGGCGCTC
AAAACATGGTCTACTTATATATGAGTAGCGCCGGGATTGGTGCTGGCTTGATTATTGATAGTCATTTATTCCGTGGCTCG
ATCGGCAGCGCTGGCGAGGTTGGCCATACCACTCTCAGCGTCGAAAACGATGAATCATTTGGGCCAATCAACGCTGGCTC
GCTCGAAGCCTTGGCTTCACAAATCACGGTTTTACGGCTGGCCCGCGAGCAAAAGCTGATTAGTGCCGATGATGATGTGC
ATACCTTGGTGCGTAAAGCCGAGAGCAGCCCTGAAATTCAAGCTATTTTGCGGCGAACTGCCCACTATCTTGGTGTGGCA
ATTGCCAGTATCATTAATATATTCAATCCTGATCGGGTTGTGATTGGCGGGGTTATTCCGGAAACCTCACCATTATTAAT
CGAGACGATTCGAGCAACGGTGGCGCGACGCGCTTTATCGATTGCAGTGAATAATACCTCGATTGTACCAGGCGCACTAG
GCCGCAATGTCGCAGCTTTAGGAGCCGCAGCCCTTGCTACCGAGCGCTTATTTGCGCCGCCAGCCCTGGAACGCCCCGCA
ACTTTAGGGGTGCATTCCAACGAGGTTGGTTCGTTGGCAAGCTAA

Upstream 100 bases:

>100_bases
AATCGCATTCTATCATAAAACAGTCATGTTTGTTTGTTGTCTTGACAAAGTACCAAATAGTTGCTAAAATCGGAGCCACT
TACCAAGTAGGAGCTTGCAA

Downstream 100 bases:

>100_bases
CAATTGCCTTTGCTGGAGCGTGGCCTAGCGTCACGCGCTACTATTCACCTGTTCGCCCTAATCGGCACGGTAACAGATTT
CTCAATATGGTACAAAGGAG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MNRPSALTADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIGTSKGGRRPIILEF
NYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMPLIKQLISTMLTESPVGRGRISAIGVGVPGPLDF
RNGRTIAPPVMPGWDNVPIREELSQTFRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGS
IGSAGEVGHTTLSVENDESFGPINAGSLEALASQITVLRLAREQKLISADDDVHTLVRKAESSPEIQAILRRTAHYLGVA
IASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRALSIAVNNTSIVPGALGRNVAALGAAALATERLFAPPALERPA
TLGVHSNEVGSLAS

Sequences:

>Translated_414_residues
MNRPSALTADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIGTSKGGRRPIILEF
NYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMPLIKQLISTMLTESPVGRGRISAIGVGVPGPLDF
RNGRTIAPPVMPGWDNVPIREELSQTFRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGS
IGSAGEVGHTTLSVENDESFGPINAGSLEALASQITVLRLAREQKLISADDDVHTLVRKAESSPEIQAILRRTAHYLGVA
IASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRALSIAVNNTSIVPGALGRNVAALGAAALATERLFAPPALERPA
TLGVHSNEVGSLAS
>Mature_414_residues
MNRPSALTADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIGTSKGGRRPIILEF
NYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMPLIKQLISTMLTESPVGRGRISAIGVGVPGPLDF
RNGRTIAPPVMPGWDNVPIREELSQTFRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGS
IGSAGEVGHTTLSVENDESFGPINAGSLEALASQITVLRLAREQKLISADDDVHTLVRKAESSPEIQAILRRTAHYLGVA
IASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRALSIAVNNTSIVPGALGRNVAALGAAALATERLFAPPALERPA
TLGVHSNEVGSLAS

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566315, Length=250, Percent_Identity=29.6, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI4885285, Length=250, Percent_Identity=29.6, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI298566325, Length=250, Percent_Identity=29.6, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI190014632, Length=250, Percent_Identity=30, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI1786891, Length=389, Percent_Identity=27.2493573264781, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787878, Length=390, Percent_Identity=24.3589743589744, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI87082127, Length=396, Percent_Identity=21.4646464646465, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081733, Length=217, Percent_Identity=27.6497695852535, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790522, Length=254, Percent_Identity=27.1653543307087, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 44039; Mature: 44039

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRPSALTADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTETGIGTSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVND
HHHCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCC
GPTVGMPLIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIR
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCHH
EELSQTFRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGS
HHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECHHHCCC
IGSAGEVGHTTLSVENDESFGPINAGSLEALASQITVLRLAREQKLISADDDVHTLVRKA
CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ESSPEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRALS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHE
IAVNNTSIVPGALGRNVAALGAAALATERLFAPPALERPATLGVHSNEVGSLAS
EEECCCEECCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MNRPSALTADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTETGIGTSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVND
HHHCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCC
GPTVGMPLIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIR
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCHH
EELSQTFRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGS
HHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECHHHCCC
IGSAGEVGHTTLSVENDESFGPINAGSLEALASQITVLRLAREQKLISADDDVHTLVRKA
CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ESSPEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRALS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHE
IAVNNTSIVPGALGRNVAALGAAALATERLFAPPALERPATLGVHSNEVGSLAS
EEECCCEECCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]