Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899872
Identifier: 159899872
GI number: 159899872
Start: 4232558
End: 4233829
Strand: Direct
Name: 159899872
Synonym: Haur_3355
Alternate gene names: NA
Gene position: 4232558-4233829 (Clockwise)
Preceding gene: 159899871
Following gene: 159899873
Centisome position: 66.69
GC content: 49.37
Gene sequence:
>1272_bases ATGATTAAGGAATCTACGCCAACGCAAGCCAGTGTGGCCGAAGCCCCTGCCCCTGCCAAATTGCCACGCGCTCGGCTTTT TCAGATCAGCTTTGGGGTTGGCGGGGTCATGCTGGCGCGGGTGTTGGGGATTTTCACCCAAATTATTTTGGCACGACGCT TGGGTGCTGAGCAATATGGCTTGTTTAACTCGCTGTATGCCTTGCTCAACCCACTGATTATTTTAGCCAACCTAGGCTTG GATAATTGGCTATTGCGTCAAAGCACGGATCGTACAAAGCTCAACAAATCGGTAAGTCGGGTGTTTGCCTTACGGGGGTT TGTGCTGGCAGGCCTGTTATTGGCCGCTGCACCATTTGTCAGTATGCGCAGCCCTGAATTTACCCCGCACCTCATTGCCT TGGCTTGTGCCGGAATTATTGGCGATTTATTGGTAGGCACCGCTGATACCGCCTTGCGAGCCTCAATTCAAGTGCTCAAA GCCTCAAGTTTGCAAATTGTGGTTGCGCTAAGTTTGTTTGTGCCGATTTGGTTTACCCCCAACTTGCCATTTTCCACCGT GGTGATCTATCGTTGTATCGCGGTAGCCTTGGGCTTTGGCCTGAGTGTCTACTACTTGCATGGCATTTTGCGCTGGGTTT GGCAACCACGCCAATGGATCAATACAATTAGCGAGGCGCGTTTCTACTTTATCTCCGAGGTGATGGCCTATTTGACCTTG CGGGTTGATCTGTTTTTGGTGGCTTTGCTGCTACCAACGATCAATTCAGGGATTTATGCGCCACCACTAGCAATTATCAA TAATACCTTTTTAGTGCCCAGTATTACCGCCCAAATCTTGCTACCGATGATCGTCAAGCATCCGCCGCGCTCACCACTCT ATCGCCGCGTGATTAGCTTGGCAATTGGCTTGAGCATTCTCTACGGCTTGGCATGGTTGGCGCTGCTCACCTGGCATTCC GATTGGATTATCAATCTGATGTATGGGCCACAATATGCCGATGCCATCCCGTTGTTGCAAATCATGGCCATCATTCCATT GCTCAAAAGCCTGAATTTCTGCTGGGCGACCTTTATGGTTTCCAACGATCAGCAGCCGTTACGAGTTAAATTGCAAACCA TCGGGGCCACAATTAGCATTCTCGGCAATTTTGTGGTGATTCCGTTGTATGGTCTGCATGGCGTAGCGATTATTAACATG ATCACCGAAATTGCCCTGTTTATCTCGTATGGTTATGGAGCTTGGCTGACCTATAAGAAAGTGATGCGATGA
Upstream 100 bases:
>100_bases ATGCATGGTCGGCGTTGGCGCTACGTTGGCGAGCAGGCTACGAGGAATCTTATGCGAACCAGGCACTTGACTCAACCTCA ACCAAATAGCGAGTTTGGCA
Downstream 100 bases:
>100_bases AGGTTTTATTATTGAATGCCCATTCGCCGCAAAATGCTGGCGATTTGGCCTTACTTGAGCAATCGTTGGCCCATTTACGA GCCGCGTTTCCCCATGCCGA
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MIKESTPTQASVAEAPAPAKLPRARLFQISFGVGGVMLARVLGIFTQIILARRLGAEQYGLFNSLYALLNPLIILANLGL DNWLLRQSTDRTKLNKSVSRVFALRGFVLAGLLLAAAPFVSMRSPEFTPHLIALACAGIIGDLLVGTADTALRASIQVLK ASSLQIVVALSLFVPIWFTPNLPFSTVVIYRCIAVALGFGLSVYYLHGILRWVWQPRQWINTISEARFYFISEVMAYLTL RVDLFLVALLLPTINSGIYAPPLAIINNTFLVPSITAQILLPMIVKHPPRSPLYRRVISLAIGLSILYGLAWLALLTWHS DWIINLMYGPQYADAIPLLQIMAIIPLLKSLNFCWATFMVSNDQQPLRVKLQTIGATISILGNFVVIPLYGLHGVAIINM ITEIALFISYGYGAWLTYKKVMR
Sequences:
>Translated_423_residues MIKESTPTQASVAEAPAPAKLPRARLFQISFGVGGVMLARVLGIFTQIILARRLGAEQYGLFNSLYALLNPLIILANLGL DNWLLRQSTDRTKLNKSVSRVFALRGFVLAGLLLAAAPFVSMRSPEFTPHLIALACAGIIGDLLVGTADTALRASIQVLK ASSLQIVVALSLFVPIWFTPNLPFSTVVIYRCIAVALGFGLSVYYLHGILRWVWQPRQWINTISEARFYFISEVMAYLTL RVDLFLVALLLPTINSGIYAPPLAIINNTFLVPSITAQILLPMIVKHPPRSPLYRRVISLAIGLSILYGLAWLALLTWHS DWIINLMYGPQYADAIPLLQIMAIIPLLKSLNFCWATFMVSNDQQPLRVKLQTIGATISILGNFVVIPLYGLHGVAIINM ITEIALFISYGYGAWLTYKKVMR >Mature_423_residues MIKESTPTQASVAEAPAPAKLPRARLFQISFGVGGVMLARVLGIFTQIILARRLGAEQYGLFNSLYALLNPLIILANLGL DNWLLRQSTDRTKLNKSVSRVFALRGFVLAGLLLAAAPFVSMRSPEFTPHLIALACAGIIGDLLVGTADTALRASIQVLK ASSLQIVVALSLFVPIWFTPNLPFSTVVIYRCIAVALGFGLSVYYLHGILRWVWQPRQWINTISEARFYFISEVMAYLTL RVDLFLVALLLPTINSGIYAPPLAIINNTFLVPSITAQILLPMIVKHPPRSPLYRRVISLAIGLSILYGLAWLALLTWHS DWIINLMYGPQYADAIPLLQIMAIIPLLKSLNFCWATFMVSNDQQPLRVKLQTIGATISILGNFVVIPLYGLHGVAIINM ITEIALFISYGYGAWLTYKKVMR
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46795; Mature: 46795
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKESTPTQASVAEAPAPAKLPRARLFQISFGVGGVMLARVLGIFTQIILARRLGAEQYG CCCCCCCCCHHHHCCCCCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHH LFNSLYALLNPLIILANLGLDNWLLRQSTDRTKLNKSVSRVFALRGFVLAGLLLAAAPFV HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SMRSPEFTPHLIALACAGIIGDLLVGTADTALRASIQVLKASSLQIVVALSLFVPIWFTP HCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC NLPFSTVVIYRCIAVALGFGLSVYYLHGILRWVWQPRQWINTISEARFYFISEVMAYLTL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH RVDLFLVALLLPTINSGIYAPPLAIINNTFLVPSITAQILLPMIVKHPPRSPLYRRVISL HHHHHHHHHHHHHHCCCCCCCCHHHHCCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHH AIGLSILYGLAWLALLTWHSDWIINLMYGPQYADAIPLLQIMAIIPLLKSLNFCWATFMV HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE SNDQQPLRVKLQTIGATISILGNFVVIPLYGLHGVAIINMITEIALFISYGYGAWLTYKK CCCCCCCEEEHHHHHHHHHHHHCHHEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VMR HHC >Mature Secondary Structure MIKESTPTQASVAEAPAPAKLPRARLFQISFGVGGVMLARVLGIFTQIILARRLGAEQYG CCCCCCCCCHHHHCCCCCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHH LFNSLYALLNPLIILANLGLDNWLLRQSTDRTKLNKSVSRVFALRGFVLAGLLLAAAPFV HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SMRSPEFTPHLIALACAGIIGDLLVGTADTALRASIQVLKASSLQIVVALSLFVPIWFTP HCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC NLPFSTVVIYRCIAVALGFGLSVYYLHGILRWVWQPRQWINTISEARFYFISEVMAYLTL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH RVDLFLVALLLPTINSGIYAPPLAIINNTFLVPSITAQILLPMIVKHPPRSPLYRRVISL HHHHHHHHHHHHHHCCCCCCCCHHHHCCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHH AIGLSILYGLAWLALLTWHSDWIINLMYGPQYADAIPLLQIMAIIPLLKSLNFCWATFMV HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE SNDQQPLRVKLQTIGATISILGNFVVIPLYGLHGVAIINMITEIALFISYGYGAWLTYKK CCCCCCCEEEHHHHHHHHHHHHCHHEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VMR HHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA