BacMap

Definition	Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession	NC_009972
Length	6,346,587

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The map label for this gene is rfbB [H]

Identifier: 159899651

GI number: 159899651

Start: 3960337

End: 3961608

Strand: Direct

Name: rfbB [H]

Synonym: Haur_3133

Alternate gene names: 159899651

Gene position: 3960337-3961608 (Clockwise)

Preceding gene: 159899650

Following gene: 159899652

Centisome position: 62.4

GC content: 48.66

Gene sequence:

>1272_bases
ATGATTATTTTCGAGAACGTTTCCAAGCATTTTACGATCAAACGTGATCGACGTAATAGTATTCAGGAACGGATCGCCGG
TTTATTCAAGCCGCAAGTGCTGCCTGACGAGGATTTTTGGGCGTTACGCGATGTCAGTTTTACGATCAATCGTGGCGAAA
CGGTTGGCCTAATTGGCCATAATGGTTCAGGCAAATCGACCACACTCAAGCTAATTACCCGTATTTTGCAGCCCAACAGC
GGCAAAGTAATTGTCGATGGCCGGGTTTCGGCCTTGCTTGAGCTTGGTTCAGGCTTCCACCCCGACCTAACAGGCCGCGA
AAATATCTTCTTGAATGGCTCGCTGCTCGGCTTCAATCGGGCCGAAATGGCCGAAAAAGTGCCAGCGATCATTCGCTTCT
CCGAGATGCAAGAATTTATCGACATGCCCGTCAAGCACTATTCATCGGGGATGTATATGCGCTTGGGCTTTGCCGTGGCG
ATCAACGTCGATCCCGATATTTTGATCACCGACGAAGTGCTCGCGGTTGGCGATGAGTTGTTTCAGCGCAAATGCTTGGA
TCGGATTTACCAACTCAAACGCCGTGGCAAAACGATTTTGTTCGTCTCGCATGCCTTGGGCCAAGTGCGCGACTTATGCG
ATCGGGCCTTGTGGTTTCATCATGGCAATTTAATGACCGATAGCACACCCACCGAAACAATCGACAATTATTTAGCCGAA
ACCAACCAACGTGATGCTGAGCGGATCGAGGCCGAAAAAGCCGCCGAAAACCCTGAACCAGAAGCACCAAGTACTGAAAT
CGAAACCAAGACCGAAGAAGAAATCGAATTTGATGCTCGGCGCTGGGGCAGTCGTGAGGCTGAGATCTATAATGTAGAAT
TGTTGAATGCTGCTGGCGAAGTGATTCAAACCGCTACCACCGGCCAAGCTCTGACCATTCGCATGCACTATCAAGCCCAC
CAACCAATTGAAAAACCGGTCTTTGGCGTGGCAATCCATCATCGCACAGGCTTTCACATCAACGGGCCAAATTCGCGCTT
TGCTGGGCTTGAAATTCCCCAAATCGCCGAACAAGGCTATGTTGATTATCAGATCGAAAATCTACCGTTGCTTGAAGGCA
ACTATGAACTTTCGGTGGCGTTGTATGACCATACCTTGACCCATCCGTATGATCATCACGATCGCAAACACAATTTACGG
GTGTATGCGGCCTCAATTGGTGAACAATTTGGCACAATTTATATTCCTTCGCAATGGTCTTGGCATAAATAA

Upstream 100 bases:

>100_bases
CCCGAACTGGCCTGACCGCCTTGATTGTGCTGTGTTTCGGAGCCTATGTGTTCAACCATTACAGCGCCCGATTTGGCGAA
GAACTCTAAGCGAGGCAATG

Downstream 100 bases:

>100_bases
GCAAGCGCCCACATCGTAGGATCAGCTCCAATTCTTGCAATTGGATTGTTGTTAGGGAGTTTTTGTATGCGTCGATGGTT
TTCGATTAGCTTATTGCTTT

Product: ABC transporter-like protein

Products: ADP; phosphate; L-proline [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MIIFENVSKHFTIKRDRRNSIQERIAGLFKPQVLPDEDFWALRDVSFTINRGETVGLIGHNGSGKSTTLKLITRILQPNS
GKVIVDGRVSALLELGSGFHPDLTGRENIFLNGSLLGFNRAEMAEKVPAIIRFSEMQEFIDMPVKHYSSGMYMRLGFAVA
INVDPDILITDEVLAVGDELFQRKCLDRIYQLKRRGKTILFVSHALGQVRDLCDRALWFHHGNLMTDSTPTETIDNYLAE
TNQRDAERIEAEKAAENPEPEAPSTEIETKTEEEIEFDARRWGSREAEIYNVELLNAAGEVIQTATTGQALTIRMHYQAH
QPIEKPVFGVAIHHRTGFHINGPNSRFAGLEIPQIAEQGYVDYQIENLPLLEGNYELSVALYDHTLTHPYDHHDRKHNLR
VYAASIGEQFGTIYIPSQWSWHK

Sequences:

>Translated_423_residues
MIIFENVSKHFTIKRDRRNSIQERIAGLFKPQVLPDEDFWALRDVSFTINRGETVGLIGHNGSGKSTTLKLITRILQPNS
GKVIVDGRVSALLELGSGFHPDLTGRENIFLNGSLLGFNRAEMAEKVPAIIRFSEMQEFIDMPVKHYSSGMYMRLGFAVA
INVDPDILITDEVLAVGDELFQRKCLDRIYQLKRRGKTILFVSHALGQVRDLCDRALWFHHGNLMTDSTPTETIDNYLAE
TNQRDAERIEAEKAAENPEPEAPSTEIETKTEEEIEFDARRWGSREAEIYNVELLNAAGEVIQTATTGQALTIRMHYQAH
QPIEKPVFGVAIHHRTGFHINGPNSRFAGLEIPQIAEQGYVDYQIENLPLLEGNYELSVALYDHTLTHPYDHHDRKHNLR
VYAASIGEQFGTIYIPSQWSWHK
>Mature_423_residues
MIIFENVSKHFTIKRDRRNSIQERIAGLFKPQVLPDEDFWALRDVSFTINRGETVGLIGHNGSGKSTTLKLITRILQPNS
GKVIVDGRVSALLELGSGFHPDLTGRENIFLNGSLLGFNRAEMAEKVPAIIRFSEMQEFIDMPVKHYSSGMYMRLGFAVA
INVDPDILITDEVLAVGDELFQRKCLDRIYQLKRRGKTILFVSHALGQVRDLCDRALWFHHGNLMTDSTPTETIDNYLAE
TNQRDAERIEAEKAAENPEPEAPSTEIETKTEEEIEFDARRWGSREAEIYNVELLNAAGEVIQTATTGQALTIRMHYQAH
QPIEKPVFGVAIHHRTGFHINGPNSRFAGLEIPQIAEQGYVDYQIENLPLLEGNYELSVALYDHTLTHPYDHHDRKHNLR
VYAASIGEQFGTIYIPSQWSWHK

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=230, Percent_Identity=28.695652173913, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI27477115, Length=194, Percent_Identity=29.8969072164948, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=30.2439024390244, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI6005701, Length=224, Percent_Identity=27.2321428571429, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI27436953, Length=190, Percent_Identity=27.8947368421053, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI116734710, Length=228, Percent_Identity=25, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI150417984, Length=239, Percent_Identity=24.2677824267782, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI27262624, Length=214, Percent_Identity=27.5700934579439, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27262626, Length=214, Percent_Identity=27.5700934579439, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI47078218, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI45446740, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI105990541, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI30795238, Length=187, Percent_Identity=25.668449197861, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI27881501, Length=187, Percent_Identity=25.668449197861, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=28.9473684210526, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI48994943, Length=264, Percent_Identity=28.030303030303, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081709, Length=200, Percent_Identity=26.5, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081782, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787547, Length=221, Percent_Identity=25.3393665158371, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787370, Length=238, Percent_Identity=25.2100840336134, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=27.4038461538462, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787029, Length=258, Percent_Identity=27.906976744186, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI48995001, Length=201, Percent_Identity=26.3681592039801, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693107, Length=226, Percent_Identity=25.6637168141593, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=29.5238095238095, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788450, Length=206, Percent_Identity=27.1844660194175, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788210, Length=214, Percent_Identity=26.6355140186916, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=211, Percent_Identity=27.9620853080569, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787758, Length=194, Percent_Identity=26.2886597938144, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994883, Length=217, Percent_Identity=26.7281105990783, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=218, Percent_Identity=27.9816513761468, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788540, Length=202, Percent_Identity=29.7029702970297, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=27.5423728813559, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789593, Length=218, Percent_Identity=27.0642201834862, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788897, Length=206, Percent_Identity=24.7572815533981, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87082267, Length=206, Percent_Identity=24.2718446601942, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=23.8805970149254, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=22.2222222222222, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI87082268, Length=210, Percent_Identity=25.7142857142857, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=223, Percent_Identity=26.457399103139, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=223, Percent_Identity=26.457399103139, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=223, Percent_Identity=26.457399103139, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=310, Percent_Identity=26.1290322580645, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=187, Percent_Identity=26.7379679144385, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=275, Percent_Identity=24, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=223, Percent_Identity=24.2152466367713, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=244, Percent_Identity=27.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=256, Percent_Identity=24.609375, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=246, Percent_Identity=24.7967479674797, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=207, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=210, Percent_Identity=24.2857142857143, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=191, Percent_Identity=27.2251308900524, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221500365, Length=191, Percent_Identity=27.2251308900524, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221512771, Length=184, Percent_Identity=27.7173913043478, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=189, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582014, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582012, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24666092, Length=198, Percent_Identity=25.7575757575758, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362751, Length=214, Percent_Identity=25.7009345794392, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=25.4901960784314, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648314, Length=200, Percent_Identity=24.5, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650853, Length=215, Percent_Identity=25.5813953488372, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=25.4901960784314, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650855, Length=215, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 48062; Mature: 48062

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFENVSKHFTIKRDRRNSIQERIAGLFKPQVLPDEDFWALRDVSFTINRGETVGLIGH
CEEECCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEC
NGSGKSTTLKLITRILQPNSGKVIVDGRVSALLELGSGFHPDLTGRENIFLNGSLLGFNR
CCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCEEEEECEEECCCH
AEMAEKVPAIIRFSEMQEFIDMPVKHYSSGMYMRLGFAVAINVDPDILITDEVLAVGDEL
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEEEEEEEECCCCEEEEHHHHHHHHHH
FQRKCLDRIYQLKRRGKTILFVSHALGQVRDLCDRALWFHHGNLMTDSTPTETIDNYLAE
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH
TNQRDAERIEAEKAAENPEPEAPSTEIETKTEEEIEFDARRWGSREAEIYNVELLNAAGE
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEHHHHH
VIQTATTGQALTIRMHYQAHQPIEKPVFGVAIHHRTGFHINGPNSRFAGLEIPQIAEQGY
HHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCHHHHHCCC
VDYQIENLPLLEGNYELSVALYDHTLTHPYDHHDRKHNLRVYAASIGEQFGTIYIPSQWS
EEEEECCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCC
WHK
CCC
>Mature Secondary Structure
MIIFENVSKHFTIKRDRRNSIQERIAGLFKPQVLPDEDFWALRDVSFTINRGETVGLIGH
CEEECCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEC
NGSGKSTTLKLITRILQPNSGKVIVDGRVSALLELGSGFHPDLTGRENIFLNGSLLGFNR
CCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCEEEEECEEECCCH
AEMAEKVPAIIRFSEMQEFIDMPVKHYSSGMYMRLGFAVAINVDPDILITDEVLAVGDEL
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEEEEEEEECCCCEEEEHHHHHHHHHH
FQRKCLDRIYQLKRRGKTILFVSHALGQVRDLCDRALWFHHGNLMTDSTPTETIDNYLAE
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH
TNQRDAERIEAEKAAENPEPEAPSTEIETKTEEEIEFDARRWGSREAEIYNVELLNAAGE
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEHHHHH
VIQTATTGQALTIRMHYQAHQPIEKPVFGVAIHHRTGFHINGPNSRFAGLEIPQIAEQGY
HHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCHHHHHCCC
VDYQIENLPLLEGNYELSVALYDHTLTHPYDHHDRKHNLRVYAASIGEQFGTIYIPSQWS
EEEEECCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCC
WHK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-proline [Periplasm]; H2O [C]

Specific reaction: ATP + L-proline [Periplasm] + H2O = ADP + phosphate + L-proline [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]