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The map label for this gene is rfbA [H]

Identifier: 159899650

GI number: 159899650

Start: 3958613

End: 3960325

Strand: Direct

Name: rfbA [H]

Synonym: Haur_3132

Alternate gene names: 159899650

Gene position: 3958613-3960325 (Clockwise)

Preceding gene: 159899649

Following gene: 159899651

Centisome position: 62.37

GC content: 47.4

Gene sequence:

>1713_bases
ATGGCTCAAACCATCAACGCCGCACGTACCATAAATGGCCAACGTCGTCGGTTGGGCGGCTTTCATTGGTTTTTGTTGTT
ACTGACGATTGGCATGACCTTGCTGATTTCAGCGCCAACTCTGTTTTTTCAAACGGTTCAATACGATGCCAGCGCAACGA
TTCAGCTCGATACCCAGCGCTATCGCAGTTTTATGGCCGAGCAAACTTTGCAAAATCAGTTGTGCGATGCTAGCCGCAAT
GTAGTCAAAAGCATTTTGCCCAAATTTGGCAGCAATACCTTTGGCTCAGCCTGCGCCGCACTCGCCGCTGACGGTAGCTT
GATCCTGACTGCTCAAGCCACTTCGCCCGAAAATGCCCAAGCTGCCGCTGATTACACCGCCCAAAAGCTGATTCAGCACA
TTCGCGCGGCTGGTGGGCGTGATAGTTTGCGCCGTTTGATGGAGTATGAGCTAGGCTTATTACTCAAAAATCAACCTGCC
AACGACGAACTTGGGCGACGCTTGCGCGAATTGATCGGCGTGCAAGCCTTTGATTTTTCGCTGCACGCCAGCACTGATCT
ACCAACGATCAACGCCGAAGATCTGAACGATCTGATTCGGGCATTCGAAGTGCGCTTTGATCAAATTGCGTTTGAGTTAC
GTCAACCAGATTTACCCGCCGAACGGGCACGCGATCTCAAAACTGCCCGTGGTTTGATTGGCACAATCTTGACCGATGTG
CTCTACTCCGACCCGCGCTATCAATCAGATGATAGCCAAATCAGTGCCGCGTATATCAAACAAGCGGCGATCTTGCCAAC
TCAAGCCCGTTCGCAAAATTTTGCGCTCAAATTTGGTTTAGCTTTGGTTGTTGGGATCGTTGGCGGGATTTTGTTGGTGC
TGGCCGATCGAGCAATCGGCATCGTCGATAAAGTTCGCGAGCTGTGGGAATATCGTGAACTCATTCGCAACTTGGTGCTG
CGCGATTTACGTTCACGCTACAAAAACTCGGCATTGGGCTATGTTTGGTCGTTGCTCAACCCATTGTTGATGATTTCCAT
CTTCTATTTAATTTTTGGCTTGCTGCTGAATTCCAATATTCGCCATTTTCATATTTTCTTGATGGTGGCGTTATTACCGT
GGAATTACTTTATCGGCGGCATGGCTGAAGGTATGATGAGCGTCATCAGCAATGCTAATTTAGTTAAAAAAGTGTATTTC
CCGCGTGAAATCCTGCCAATCACCACATTAATTTCCAATTTGGTGAATTTTATGTTGGCCTTGCCAATCATGTTTTTGAT
TATGTTCATCACTGGTGCACCAATCAAAGCTACGCTTTTATTGATGCCCGTGATTATTGTGATCGAAAGCATGTTTATTT
TGGGCATGATTTTATTCTTATCATCGGTGATCGTGTTTTATCGCGATGTTTCGCATATTATGGGGATTGTGTTGCAATTG
TGGTTTTTTATCACGCCAGTATTTTATCCCTTAGATAATATTGCCAGTGCTAATTACGCCAAACTGGTGCGTTGGCTCAA
TCCAATGGCCTCGATTGTCGATTTCTATCGCGATATTGCCTATGGTGGGGTCACGACGATTCCCGATTATCCAACGCCTG
GCTTGCCCAGCCTCGATGGAGTGGCCCGAACTGGCCTGACCGCCTTGATTGTGCTGTGTTTCGGAGCCTATGTGTTCAAC
CATTACAGCGCCCGATTTGGCGAAGAACTCTAA

Upstream 100 bases:

>100_bases
TTCCGGCTGAGAGCACTGGCAGCGATAAAGGCAATTTTGATCAGGCTAACCATCGGCTGATTCTTGATTTACCAGCAAAC
TCCGCCGAGGAGATTACGAT

Downstream 100 bases:

>100_bases
GCGAGGCAATGATGATTATTTTCGAGAACGTTTCCAAGCATTTTACGATCAAACGTGATCGACGTAATAGTATTCAGGAA
CGGATCGCCGGTTTATTCAA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MAQTINAARTINGQRRRLGGFHWFLLLLTIGMTLLISAPTLFFQTVQYDASATIQLDTQRYRSFMAEQTLQNQLCDASRN
VVKSILPKFGSNTFGSACAALAADGSLILTAQATSPENAQAAADYTAQKLIQHIRAAGGRDSLRRLMEYELGLLLKNQPA
NDELGRRLRELIGVQAFDFSLHASTDLPTINAEDLNDLIRAFEVRFDQIAFELRQPDLPAERARDLKTARGLIGTILTDV
LYSDPRYQSDDSQISAAYIKQAAILPTQARSQNFALKFGLALVVGIVGGILLVLADRAIGIVDKVRELWEYRELIRNLVL
RDLRSRYKNSALGYVWSLLNPLLMISIFYLIFGLLLNSNIRHFHIFLMVALLPWNYFIGGMAEGMMSVISNANLVKKVYF
PREILPITTLISNLVNFMLALPIMFLIMFITGAPIKATLLLMPVIIVIESMFILGMILFLSSVIVFYRDVSHIMGIVLQL
WFFITPVFYPLDNIASANYAKLVRWLNPMASIVDFYRDIAYGGVTTIPDYPTPGLPSLDGVARTGLTALIVLCFGAYVFN
HYSARFGEEL

Sequences:

>Translated_570_residues
MAQTINAARTINGQRRRLGGFHWFLLLLTIGMTLLISAPTLFFQTVQYDASATIQLDTQRYRSFMAEQTLQNQLCDASRN
VVKSILPKFGSNTFGSACAALAADGSLILTAQATSPENAQAAADYTAQKLIQHIRAAGGRDSLRRLMEYELGLLLKNQPA
NDELGRRLRELIGVQAFDFSLHASTDLPTINAEDLNDLIRAFEVRFDQIAFELRQPDLPAERARDLKTARGLIGTILTDV
LYSDPRYQSDDSQISAAYIKQAAILPTQARSQNFALKFGLALVVGIVGGILLVLADRAIGIVDKVRELWEYRELIRNLVL
RDLRSRYKNSALGYVWSLLNPLLMISIFYLIFGLLLNSNIRHFHIFLMVALLPWNYFIGGMAEGMMSVISNANLVKKVYF
PREILPITTLISNLVNFMLALPIMFLIMFITGAPIKATLLLMPVIIVIESMFILGMILFLSSVIVFYRDVSHIMGIVLQL
WFFITPVFYPLDNIASANYAKLVRWLNPMASIVDFYRDIAYGGVTTIPDYPTPGLPSLDGVARTGLTALIVLCFGAYVFN
HYSARFGEEL
>Mature_569_residues
AQTINAARTINGQRRRLGGFHWFLLLLTIGMTLLISAPTLFFQTVQYDASATIQLDTQRYRSFMAEQTLQNQLCDASRNV
VKSILPKFGSNTFGSACAALAADGSLILTAQATSPENAQAAADYTAQKLIQHIRAAGGRDSLRRLMEYELGLLLKNQPAN
DELGRRLRELIGVQAFDFSLHASTDLPTINAEDLNDLIRAFEVRFDQIAFELRQPDLPAERARDLKTARGLIGTILTDVL
YSDPRYQSDDSQISAAYIKQAAILPTQARSQNFALKFGLALVVGIVGGILLVLADRAIGIVDKVRELWEYRELIRNLVLR
DLRSRYKNSALGYVWSLLNPLLMISIFYLIFGLLLNSNIRHFHIFLMVALLPWNYFIGGMAEGMMSVISNANLVKKVYFP
REILPITTLISNLVNFMLALPIMFLIMFITGAPIKATLLLMPVIIVIESMFILGMILFLSSVIVFYRDVSHIMGIVLQLW
FFITPVFYPLDNIASANYAKLVRWLNPMASIVDFYRDIAYGGVTTIPDYPTPGLPSLDGVARTGLTALIVLCFGAYVFNH
YSARFGEEL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 63735; Mature: 63603

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTINAARTINGQRRRLGGFHWFLLLLTIGMTLLISAPTLFFQTVQYDASATIQLDTQR
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
YRSFMAEQTLQNQLCDASRNVVKSILPKFGSNTFGSACAALAADGSLILTAQATSPENAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCH
AAADYTAQKLIQHIRAAGGRDSLRRLMEYELGLLLKNQPANDELGRRLRELIGVQAFDFS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHCCEE
LHASTDLPTINAEDLNDLIRAFEVRFDQIAFELRQPDLPAERARDLKTARGLIGTILTDV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LYSDPRYQSDDSQISAAYIKQAAILPTQARSQNFALKFGLALVVGIVGGILLVLADRAIG
HHCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVDKVRELWEYRELIRNLVLRDLRSRYKNSALGYVWSLLNPLLMISIFYLIFGLLLNSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RHFHIFLMVALLPWNYFIGGMAEGMMSVISNANLVKKVYFPREILPITTLISNLVNFMLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LPIMFLIMFITGAPIKATLLLMPVIIVIESMFILGMILFLSSVIVFYRDVSHIMGIVLQL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFFITPVFYPLDNIASANYAKLVRWLNPMASIVDFYRDIAYGGVTTIPDYPTPGLPSLDG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
VARTGLTALIVLCFGAYVFNHYSARFGEEL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AQTINAARTINGQRRRLGGFHWFLLLLTIGMTLLISAPTLFFQTVQYDASATIQLDTQR
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
YRSFMAEQTLQNQLCDASRNVVKSILPKFGSNTFGSACAALAADGSLILTAQATSPENAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCH
AAADYTAQKLIQHIRAAGGRDSLRRLMEYELGLLLKNQPANDELGRRLRELIGVQAFDFS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHCCEE
LHASTDLPTINAEDLNDLIRAFEVRFDQIAFELRQPDLPAERARDLKTARGLIGTILTDV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LYSDPRYQSDDSQISAAYIKQAAILPTQARSQNFALKFGLALVVGIVGGILLVLADRAIG
HHCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVDKVRELWEYRELIRNLVLRDLRSRYKNSALGYVWSLLNPLLMISIFYLIFGLLLNSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RHFHIFLMVALLPWNYFIGGMAEGMMSVISNANLVKKVYFPREILPITTLISNLVNFMLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LPIMFLIMFITGAPIKATLLLMPVIIVIESMFILGMILFLSSVIVFYRDVSHIMGIVLQL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFFITPVFYPLDNIASANYAKLVRWLNPMASIVDFYRDIAYGGVTTIPDYPTPGLPSLDG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
VARTGLTALIVLCFGAYVFNHYSARFGEEL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]