Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899649
Identifier: 159899649
GI number: 159899649
Start: 3956856
End: 3958646
Strand: Direct
Name: 159899649
Synonym: Haur_3131
Alternate gene names: NA
Gene position: 3956856-3958646 (Clockwise)
Preceding gene: 159899648
Following gene: 159899650
Centisome position: 62.35
GC content: 53.82
Gene sequence:
>1791_bases ATGCAGCGGTTTCGCCAATCTTCGATCATTCTGCTTCTGACCATGGCTTTGTTGGGCCTTGGCAGCCTGTTGATCGCTCA GTGGTTACGCCCCGATCGTTCGCCACGCATCTGGACAGGCGGCAATATTTTGGCTAATGCCGATTGGCAGAGCGCCGCCG ATAACGGGATTCCCGATGGTTGGTCGGGCAATGGCATCAAACGCGCCGATACCACCAATGGCTATGTGCTCGATGATCAA TATAGCTTGCAGTTGTATGGGGTCAATAGTTTTGCCCGTTCGCCACGCTTAACTGCCCAAGCAGGCCAGCGCTATCGACT GGGCTTTCAAGCCCTGATCGATCCCGGCACGCAGCGAAGCAGTTTGGGCGCACAAATTCAGGTTTGGGTGCATTGGGTCG ATACTGCTGGCGATGATATTCGGCTCGATAAGCAAGCTCCAGTTTTGCTGGGCTTCGATAGCCAAGGCGCAGCAACCTGG ACTCCAGTGTTGGTTGAAACTGAACCCAGCCCCAATCAAGCCGCTTGGCTAGCAATTTCAATCCACGCGCTTTCTGATGA CCCAATTTATCTTGATAATTTGAGTATGGCAGCGGCTGGCATTTACATCGAACCCTATCCGCAGGGCGCGATTGCTGCTG TGAGTTTTAGTGTCGATTGGGAAACAGCCATGGGCGGGGCGATTCACTCGCTCAGTTTGTCAACCGATGCGATCAGCAGC GCCACGACCTTGGGTTTACAAGCTCGCCAAGGCACATACAATTTGCTGGACTTGTTTGCGCCGCATCACATTCGCGGCAC ATGGTTTGGCAATGGCTATAATTTTTTATTCGGCAACCAAGAGCGCCGCACCTGGATGGACGACCCAACCTTTGCTTGGG CTGCCAGTACGCCGCGCCGTTGGCAAACCATCGATTGGTCACAAACGCCGTGGTTCAGCCACGATCCCTATGGCACGGTC GAGAGCGATCCAGCCTGGTATTTTGGCGATTTACTTGAACCGCTACGAAACGCTCAGCAAACGATCGAAAGTCATACATT TAGCCATATGTACATTGGCTTTGCCCATGCCAAAGAGTTAGCTAGCGATAGCAATGAGTGGCAGGCAGTGACAAGCAGCC AAGGCATTGCGCCCGCCAGCAGTTTAGCTTTCCCGTATGGCGGCAGCGATGGCATGACCGAAGCCCATTGGCAAACCTTG CAAGCCGCAGGTATTCGCACCGTCGTGCGCACCCGCGTGCTTGATGCCACCAACGTGCAACGTGGTGTGAATGATCGCCA TTTGTTGATCGATCGGCGTTGGTGGCAACCGCGCCAATTGCCAGGCCACGATCTGGTTGCCTTGCCCGATGTTTACCTGA CCCCGCAAACCGCTATGACTGCAACCAATTACTTGCAGCAAGCCATCGCTAGCGGCGGTGTGATCGATATCTATGCCCAT AATTACGAAATTTACAACCCTGAGCAAATTGGCGTTTGGCAAACGGCAATTCAACAGGCAGTTGAAGCCCAAGCGTGGAT CGCCACAGTGCCGGAAATTGCCGACCGCTGGCGAGCACGCCAAACGCTCCAACTCACCATCGAACAAACCCCTGATCAAC TTCGGCTTCAGCTCGCCAATCCCAGTCGTTTCGATTTAGCCCAGCTTAGCTTGCGGCTTCCGGCTGAGAGCACTGGCAGC GATAAAGGCAATTTTGATCAGGCTAACCATCGGCTGATTCTTGATTTACCAGCAAACTCCGCCGAGGAGATTACGATATG GCTCAAACCATCAACGCCGCACGTACCATAA
Upstream 100 bases:
>100_bases TGGCTGAGTAAATCGTCGAAGCCTGATTTTTTGTCAAGCCGCCAGCCCTGTGTTAAAATGCGCTATTGCGTTGAACACGC ACTAGCTTGAAGGGCTTTTG
Downstream 100 bases:
>100_bases ATGGCCAACGTCGTCGGTTGGGCGGCTTTCATTGGTTTTTGTTGTTACTGACGATTGGCATGACCTTGCTGATTTCAGCG CCAACTCTGTTTTTTCAAAC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 596; Mature: 596
Protein sequence:
>596_residues MQRFRQSSIILLLTMALLGLGSLLIAQWLRPDRSPRIWTGGNILANADWQSAADNGIPDGWSGNGIKRADTTNGYVLDDQ YSLQLYGVNSFARSPRLTAQAGQRYRLGFQALIDPGTQRSSLGAQIQVWVHWVDTAGDDIRLDKQAPVLLGFDSQGAATW TPVLVETEPSPNQAAWLAISIHALSDDPIYLDNLSMAAAGIYIEPYPQGAIAAVSFSVDWETAMGGAIHSLSLSTDAISS ATTLGLQARQGTYNLLDLFAPHHIRGTWFGNGYNFLFGNQERRTWMDDPTFAWAASTPRRWQTIDWSQTPWFSHDPYGTV ESDPAWYFGDLLEPLRNAQQTIESHTFSHMYIGFAHAKELASDSNEWQAVTSSQGIAPASSLAFPYGGSDGMTEAHWQTL QAAGIRTVVRTRVLDATNVQRGVNDRHLLIDRRWWQPRQLPGHDLVALPDVYLTPQTAMTATNYLQQAIASGGVIDIYAH NYEIYNPEQIGVWQTAIQQAVEAQAWIATVPEIADRWRARQTLQLTIEQTPDQLRLQLANPSRFDLAQLSLRLPAESTGS DKGNFDQANHRLILDLPANSAEEITIWLKPSTPHVP
Sequences:
>Translated_596_residues MQRFRQSSIILLLTMALLGLGSLLIAQWLRPDRSPRIWTGGNILANADWQSAADNGIPDGWSGNGIKRADTTNGYVLDDQ YSLQLYGVNSFARSPRLTAQAGQRYRLGFQALIDPGTQRSSLGAQIQVWVHWVDTAGDDIRLDKQAPVLLGFDSQGAATW TPVLVETEPSPNQAAWLAISIHALSDDPIYLDNLSMAAAGIYIEPYPQGAIAAVSFSVDWETAMGGAIHSLSLSTDAISS ATTLGLQARQGTYNLLDLFAPHHIRGTWFGNGYNFLFGNQERRTWMDDPTFAWAASTPRRWQTIDWSQTPWFSHDPYGTV ESDPAWYFGDLLEPLRNAQQTIESHTFSHMYIGFAHAKELASDSNEWQAVTSSQGIAPASSLAFPYGGSDGMTEAHWQTL QAAGIRTVVRTRVLDATNVQRGVNDRHLLIDRRWWQPRQLPGHDLVALPDVYLTPQTAMTATNYLQQAIASGGVIDIYAH NYEIYNPEQIGVWQTAIQQAVEAQAWIATVPEIADRWRARQTLQLTIEQTPDQLRLQLANPSRFDLAQLSLRLPAESTGS DKGNFDQANHRLILDLPANSAEEITIWLKPSTPHVP >Mature_596_residues MQRFRQSSIILLLTMALLGLGSLLIAQWLRPDRSPRIWTGGNILANADWQSAADNGIPDGWSGNGIKRADTTNGYVLDDQ YSLQLYGVNSFARSPRLTAQAGQRYRLGFQALIDPGTQRSSLGAQIQVWVHWVDTAGDDIRLDKQAPVLLGFDSQGAATW TPVLVETEPSPNQAAWLAISIHALSDDPIYLDNLSMAAAGIYIEPYPQGAIAAVSFSVDWETAMGGAIHSLSLSTDAISS ATTLGLQARQGTYNLLDLFAPHHIRGTWFGNGYNFLFGNQERRTWMDDPTFAWAASTPRRWQTIDWSQTPWFSHDPYGTV ESDPAWYFGDLLEPLRNAQQTIESHTFSHMYIGFAHAKELASDSNEWQAVTSSQGIAPASSLAFPYGGSDGMTEAHWQTL QAAGIRTVVRTRVLDATNVQRGVNDRHLLIDRRWWQPRQLPGHDLVALPDVYLTPQTAMTATNYLQQAIASGGVIDIYAH NYEIYNPEQIGVWQTAIQQAVEAQAWIATVPEIADRWRARQTLQLTIEQTPDQLRLQLANPSRFDLAQLSLRLPAESTGS DKGNFDQANHRLILDLPANSAEEITIWLKPSTPHVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66123; Mature: 66123
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRFRQSSIILLLTMALLGLGSLLIAQWLRPDRSPRIWTGGNILANADWQSAADNGIPDG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEECCCCCCCCCCCCCCC WSGNGIKRADTTNGYVLDDQYSLQLYGVNSFARSPRLTAQAGQRYRLGFQALIDPGTQRS CCCCCEECCCCCCCEEECCCEEEEEEECHHHHCCCCCHHHCCCEEECCCCEEECCCCCCC SLGAQIQVWVHWVDTAGDDIRLDKQAPVLLGFDSQGAATWTPVLVETEPSPNQAAWLAIS CCCCEEEEEEEEEECCCCCEEECCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEE IHALSDDPIYLDNLSMAAAGIYIEPYPQGAIAAVSFSVDWETAMGGAIHSLSLSTDAISS EEEECCCCEEEECCCEEEEEEEEECCCCCCEEEEEEEECHHHHCCCCEEEEECCHHHHCC ATTLGLQARQGTYNLLDLFAPHHIRGTWFGNGYNFLFGNQERRTWMDDPTFAWAASTPRR HHHEEEEECCCCHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCCCC WQTIDWSQTPWFSHDPYGTVESDPAWYFGDLLEPLRNAQQTIESHTFSHMYIGFAHAKEL EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH ASDSNEWQAVTSSQGIAPASSLAFPYGGSDGMTEAHWQTLQAAGIRTVVRTRVLDATNVQ HCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH RGVNDRHLLIDRRWWQPRQLPGHDLVALPDVYLTPQTAMTATNYLQQAIASGGVIDIYAH CCCCCCEEEEECCCCCCCCCCCCCEEECCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEC NYEIYNPEQIGVWQTAIQQAVEAQAWIATVPEIADRWRARQTLQLTIEQTPDQLRLQLAN CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECC PSRFDLAQLSLRLPAESTGSDKGNFDQANHRLILDLPANSAEEITIWLKPSTPHVP CCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCC >Mature Secondary Structure MQRFRQSSIILLLTMALLGLGSLLIAQWLRPDRSPRIWTGGNILANADWQSAADNGIPDG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEECCCCCCCCCCCCCCC WSGNGIKRADTTNGYVLDDQYSLQLYGVNSFARSPRLTAQAGQRYRLGFQALIDPGTQRS CCCCCEECCCCCCCEEECCCEEEEEEECHHHHCCCCCHHHCCCEEECCCCEEECCCCCCC SLGAQIQVWVHWVDTAGDDIRLDKQAPVLLGFDSQGAATWTPVLVETEPSPNQAAWLAIS CCCCEEEEEEEEEECCCCCEEECCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEE IHALSDDPIYLDNLSMAAAGIYIEPYPQGAIAAVSFSVDWETAMGGAIHSLSLSTDAISS EEEECCCCEEEECCCEEEEEEEEECCCCCCEEEEEEEECHHHHCCCCEEEEECCHHHHCC ATTLGLQARQGTYNLLDLFAPHHIRGTWFGNGYNFLFGNQERRTWMDDPTFAWAASTPRR HHHEEEEECCCCHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCCCC WQTIDWSQTPWFSHDPYGTVESDPAWYFGDLLEPLRNAQQTIESHTFSHMYIGFAHAKEL EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH ASDSNEWQAVTSSQGIAPASSLAFPYGGSDGMTEAHWQTLQAAGIRTVVRTRVLDATNVQ HCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH RGVNDRHLLIDRRWWQPRQLPGHDLVALPDVYLTPQTAMTATNYLQQAIASGGVIDIYAH CCCCCCEEEEECCCCCCCCCCCCCEEECCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEC NYEIYNPEQIGVWQTAIQQAVEAQAWIATVPEIADRWRARQTLQLTIEQTPDQLRLQLAN CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECC PSRFDLAQLSLRLPAESTGSDKGNFDQANHRLILDLPANSAEEITIWLKPSTPHVP CCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA