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The map label for this gene is rcaC [H]

Identifier: 157963442

GI number: 157963442

Start: 4419509

End: 4420210

Strand: Direct

Name: rcaC [H]

Synonym: Spea_3630

Alternate gene names: 157963442

Gene position: 4419509-4420210 (Clockwise)

Preceding gene: 157963437

Following gene: 157963443

Centisome position: 85.41

GC content: 46.44

Gene sequence:

>702_bases
ATGGGTAACGGCCTATATACAATGACAATTAAACTACTGATTATTGAAGATAACAGCGATGTGGCGGGGATCCTTGGCGA
TTTCTTTGAAGCTAAGGGGATGGAACTCGACTTTGCCGATAACGGTGAACTCGGACTTTCTCTAGCGCAAGCTTTTGATT
TCGACGCGATCATACTCGATCTAATGCTGCCTAAACTCGATGGTCTAAGTCTGTGTAAGGCTCTGCGATCTTTAGGATGT
AGCACGCCTATCTTAATGCTCACGGCATTAGATAATAAAAGCGACCTGCTTACAGGCTTTGATTGTGGCGCCGATGATTA
CCTAGGTAAGCCTTTCGATCTCGATGTTGTTGATGCCCGAGTGCAAGCTTTGATAAAGCGTCACCGTGGCCAAGTGGCCC
AAGGGGTGCTCAAGTTTGGCGATATCGAAATCAATATCGCTAAACACCAAGCATCAAGACACAATATGCAGCTTGCGCTC
ACCCCCATCACTTACCAGATCTTGTTGCTGCTGATAAAGAGCGCCCCCAACATCGTTAAACGCGAGCAAATCATTGAAGA
AATCTGGGGACAAACACCGCCGAGTAGCGATATTTTACGCAGTCATATGTACCAGCTTCGCAATCAGCTCGATAAACCCT
TTAAGCAGCCAATGCTTGCCACAGTACCTAAAATTGGCTTTAGGCTACAGCTGGGAGAATAG

Upstream 100 bases:

>100_bases
CTGCAATGGCTTATTTTTCCGCTAGCATGCCTAAGTGGAGGTGAACAAAATGTCATTGACATTTTTTCCACATAAAAAGT
GGTAATATCTAACCAGCACA

Downstream 100 bases:

>100_bases
ATTTGCTAAAGCGCTTACTCAACCGTGTGCCATCGGCATCTAAATTACCGCAAAAGCTGCTGATCTATTTCAGCAGTATT
GCCTTAATGATAGGTCTGAC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MGNGLYTMTIKLLIIEDNSDVAGILGDFFEAKGMELDFADNGELGLSLAQAFDFDAIILDLMLPKLDGLSLCKALRSLGC
STPILMLTALDNKSDLLTGFDCGADDYLGKPFDLDVVDARVQALIKRHRGQVAQGVLKFGDIEINIAKHQASRHNMQLAL
TPITYQILLLLIKSAPNIVKREQIIEEIWGQTPPSSDILRSHMYQLRNQLDKPFKQPMLATVPKIGFRLQLGE

Sequences:

>Translated_233_residues
MGNGLYTMTIKLLIIEDNSDVAGILGDFFEAKGMELDFADNGELGLSLAQAFDFDAIILDLMLPKLDGLSLCKALRSLGC
STPILMLTALDNKSDLLTGFDCGADDYLGKPFDLDVVDARVQALIKRHRGQVAQGVLKFGDIEINIAKHQASRHNMQLAL
TPITYQILLLLIKSAPNIVKREQIIEEIWGQTPPSSDILRSHMYQLRNQLDKPFKQPMLATVPKIGFRLQLGE
>Mature_232_residues
GNGLYTMTIKLLIIEDNSDVAGILGDFFEAKGMELDFADNGELGLSLAQAFDFDAIILDLMLPKLDGLSLCKALRSLGCS
TPILMLTALDNKSDLLTGFDCGADDYLGKPFDLDVVDARVQALIKRHRGQVAQGVLKFGDIEINIAKHQASRHNMQLALT
PITYQILLLLIKSAPNIVKREQIIEEIWGQTPPSSDILRSHMYQLRNQLDKPFKQPMLATVPKIGFRLQLGE

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=34.2465753424658, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=30.4932735426009, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786911, Length=223, Percent_Identity=32.2869955156951, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=32, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=32.1266968325792, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790860, Length=201, Percent_Identity=31.3432835820896, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=29.0748898678414, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788394, Length=228, Percent_Identity=31.140350877193, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1789809, Length=181, Percent_Identity=28.7292817679558, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=25.3333333333333, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=29.2035398230088, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788550, Length=143, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787229, Length=197, Percent_Identity=24.8730964467005, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=25.1082251082251, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=31.6831683168317, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25796; Mature: 25665

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNGLYTMTIKLLIIEDNSDVAGILGDFFEAKGMELDFADNGELGLSLAQAFDFDAIILD
CCCCEEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCHHHHHHH
LMLPKLDGLSLCKALRSLGCSTPILMLTALDNKSDLLTGFDCGADDYLGKPFDLDVVDAR
HHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCHHCCCCCCCCHHHHHH
VQALIKRHRGQVAQGVLKFGDIEINIAKHQASRHNMQLALTPITYQILLLLIKSAPNIVK
HHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCEEEEECHHHHHHHHHHHHCCCCHHH
REQIIEEIWGQTPPSSDILRSHMYQLRNQLDKPFKQPMLATVPKIGFRLQLGE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCEEEEECC
>Mature Secondary Structure 
GNGLYTMTIKLLIIEDNSDVAGILGDFFEAKGMELDFADNGELGLSLAQAFDFDAIILD
CCCEEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCHHHHHHH
LMLPKLDGLSLCKALRSLGCSTPILMLTALDNKSDLLTGFDCGADDYLGKPFDLDVVDAR
HHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCHHCCCCCCCCHHHHHH
VQALIKRHRGQVAQGVLKFGDIEINIAKHQASRHNMQLALTPITYQILLLLIKSAPNIVK
HHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCEEEEECHHHHHHHHHHHHCCCCHHH
REQIIEEIWGQTPPSSDILRSHMYQLRNQLDKPFKQPMLATVPKIGFRLQLGE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]