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The map label for this gene is sigW [H]

Identifier: 157962427

GI number: 157962427

Start: 3174628

End: 3175191

Strand: Direct

Name: sigW [H]

Synonym: Spea_2606

Alternate gene names: 157962427

Gene position: 3174628-3175191 (Clockwise)

Preceding gene: 157962426

Following gene: 157962428

Centisome position: 61.35

GC content: 42.73

Gene sequence:

>564_bases
ATGTTTGATAGTTGGCGCAATAAAAAGTCGAAGTCCACGGTCTCTTCAGACATGGTTAGCAAACAACGACGATACGATAG
CCTTGTCAGGGCACTTCACGCTGATATTTACCGTTTCGCCTATTGGCTTTGCGGAGATAAACACGTCGCTGAAGACATCA
CTCAAGAAACGTTTTTACGTGCTTGGCGCTCGCTCGACTCATTGAAAGACGAGAAAGCTGCAAAAGCTTGGTTAATCACA
ATTTTACGCCGCGAAAATGCAAGACGCTTTGAGCGTAAACAGTTTAATTACTCAGATGTTGAGCAAGAGTTCATTGAAGA
TACACTTTCTGGCACAACCGAAGAGCTTGCTGAGCAATACTTAATACGCAGACAGATTTACAACTTAGAACTGGAGTACC
GAGAACCCCTGTTATTGCAAGTCATTGGCGGATTTAGTGGTGATGAAATAGCAAAAATTCTCGATTTAAATCGCAATACC
GTTATGACACGTTTATTTAGAGCAAGAAACCAACTTAAAGATCAACTCGAGCAACCACAGTTCAGGGGGCAGTCCAATGG
ATGA

Upstream 100 bases:

>100_bases
AAGCCCAGAAAGCCCAGAAAGCCCAACAAATTCAGTGATTGGAATTAACAGTTCAACGAGAGTAAGCTGTGTTTTATTGA
TCCCGTTAGAAAAATTAAAA

Downstream 100 bases:

>100_bases
GCTTAAGTTTCGCCGTCAGGCATACAGCGAGCCCAACAGCCAAGAAGCTGACTTCCTCGATGCCGCTATGGAGTCAGCTG
AAAGAGAAGCCTTCTTAAAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MFDSWRNKKSKSTVSSDMVSKQRRYDSLVRALHADIYRFAYWLCGDKHVAEDITQETFLRAWRSLDSLKDEKAAKAWLIT
ILRRENARRFERKQFNYSDVEQEFIEDTLSGTTEELAEQYLIRRQIYNLELEYREPLLLQVIGGFSGDEIAKILDLNRNT
VMTRLFRARNQLKDQLEQPQFRGQSNG

Sequences:

>Translated_187_residues
MFDSWRNKKSKSTVSSDMVSKQRRYDSLVRALHADIYRFAYWLCGDKHVAEDITQETFLRAWRSLDSLKDEKAAKAWLIT
ILRRENARRFERKQFNYSDVEQEFIEDTLSGTTEELAEQYLIRRQIYNLELEYREPLLLQVIGGFSGDEIAKILDLNRNT
VMTRLFRARNQLKDQLEQPQFRGQSNG
>Mature_187_residues
MFDSWRNKKSKSTVSSDMVSKQRRYDSLVRALHADIYRFAYWLCGDKHVAEDITQETFLRAWRSLDSLKDEKAAKAWLIT
ILRRENARRFERKQFNYSDVEQEFIEDTLSGTTEELAEQYLIRRQIYNLELEYREPLLLQVIGGFSGDEIAKILDLNRNT
VMTRLFRARNQLKDQLEQPQFRGQSNG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22237; Mature: 22237

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSWRNKKSKSTVSSDMVSKQRRYDSLVRALHADIYRFAYWLCGDKHVAEDITQETFLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AWRSLDSLKDEKAAKAWLITILRRENARRFERKQFNYSDVEQEFIEDTLSGTTEELAEQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
LIRRQIYNLELEYREPLLLQVIGGFSGDEIAKILDLNRNTVMTRLFRARNQLKDQLEQPQ
HHHHHHHCCCHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
FRGQSNG
CCCCCCC
>Mature Secondary Structure
MFDSWRNKKSKSTVSSDMVSKQRRYDSLVRALHADIYRFAYWLCGDKHVAEDITQETFLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AWRSLDSLKDEKAAKAWLITILRRENARRFERKQFNYSDVEQEFIEDTLSGTTEELAEQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
LIRRQIYNLELEYREPLLLQVIGGFSGDEIAKILDLNRNTVMTRLFRARNQLKDQLEQPQ
HHHHHHHCCCHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
FRGQSNG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]