Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is 157962426
Identifier: 157962426
GI number: 157962426
Start: 3172739
End: 3174373
Strand: Direct
Name: 157962426
Synonym: Spea_2605
Alternate gene names: NA
Gene position: 3172739-3174373 (Clockwise)
Preceding gene: 157962425
Following gene: 157962427
Centisome position: 61.31
GC content: 47.52
Gene sequence:
>1635_bases GTGGTAATACGGCATATTTTTTTACTCGCGATTATCGCCCTCACAGCCGCCTTTCCAGCTAGCGCGATCACATCGCTTCA GGCCTCTGTCGACCGTAACCCAGTTATGGAAGGTGAGTCTTTAATCCTAACAGTTACCGCAGATGACGATCTAAACAGCG GAAAACTCGATACATCTAAGCTGTTGAAAGACTTTATCGTTGGCCGAACCAGTATCAGTCGAAGCAAGCAGATAATGAAT TTCGATGCTAGCAACGAGACCCGCTGGCAAGTGCTACTATCGCCTAAAAATATAGGCACAGTCACTATTCCAGCTTTTAC TATCGATGGCATAAGCTCTAATCCAATCTCTTTATCTGTTGTAAAAACCGGTTCACAGCCGCAACAGATGAAAGACATCT TTATGCGCGCCAACCTGTCGAGTAAGCAGGCTTATGTGGGCCAGATGCTCACTTACAAGGTTAAGCTCTATTTAGCGCTA GAGTTACAGCGCGGTGTATTAAATGCACCAAACTTAGAAGGTGCGCAGATAAAGCAGCTGGGTGAAGACAAAGACAGCAC AGATGTCGTTAATGGTCGCCGATACCGAGTTATTGAACGAAACTATGCGATTGTCGCCGACCAGCCAGGAGAGCTCACCA TTGACGGTGCCAGCTTTGCCGGTGATGTCATGGTGCAGTCAAGACGCAACGGCGCTATGTTCTCTTTCAATGAAAGTAGA CCGACACAGACTCAAGCACCAAAAATGACGGTACTCATCAAGCCTATTCCTGCTGACTATCATGGGCAGTGGCTAGTATC TGACTTGGTTGTATTAAAAGAAGATTGGCCTGAAACACAGACCGAATTTAAAGTTGGCGACCCTATCACTCGCACCATCA ACTTACTGGCATCCAACGCCGATGAAACCAGTCTGCCTGACATTGTCATTAAGTCACCGAGCGCACTAAAAGCCTACCCA GAAAAGCCACAACGTAACACATTTCTGCGCGATAACCAGATGGTGTCGCAACTGACTCAAACAACGGCAATTGTCGCCAC CCAAGCTGGCACGTATACCTTGCCTGAAATCAAGGTCCCTTGGTGGAATCCACATCTGAATAAACAGCAATTTGCGACTT TACCTGCGCGCACTATCACGGTGACAGGTGGCGCTGCAATTGAGCCTATACAGCCGCAAATAACCACGCCATCAAGCAAT ACCCACGCTGGCTTTTGGCCTTGGATATCTTTAGTGCTCGGCTGTTTATGGGTCATCACTTTGCTACTTTGGCTAAAAGA GCGCAGAAACAAGCAAGTAGCGCCCAATATTGAGTCGAGTGCCAAGGCTCCCCTCGCTGTTTCAGGCCTCACGAATCTAC AAACAGCTTGCCATACAAAAGATCCCACAGGGGTACTTAATGCGCTTACTCGCTATTATGGCGAGCTATATCAGAGGCCT ATGACCCTTAGTCAAATTGCGGCAACAGATATCAACTTAAGCGATTGCATTAACCAATTACAGCAAGCAGCCTACGGTGC AAACCAGCAATCTAGCACGGTAGATTTTGGTCAGATCTTATCTATTGCGAAAATGGCCAAGGCTGAAACAAGCCCAGCTA AGGCTTCAGCACTGGCTAAGCTGAACCCTAGCTAG
Upstream 100 bases:
>100_bases GGGCCGTTGCAGATGATCCACAGGTCTTACTGCGAAATAAAATGCAACTTGAATATCAGAAACGTCGCCAACAAGGCATC AATTCTAAGGAAAACGAACA
Downstream 100 bases:
>100_bases CAAAGTTGCATAGCTAGACGCGATAAGCCGTTATCGACAATTTATGTCGATAACGGCTTTAATTTTTAAGCACTGCATTT AATCAATAAGCGTCTGCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 544; Mature: 544
Protein sequence:
>544_residues MVIRHIFLLAIIALTAAFPASAITSLQASVDRNPVMEGESLILTVTADDDLNSGKLDTSKLLKDFIVGRTSISRSKQIMN FDASNETRWQVLLSPKNIGTVTIPAFTIDGISSNPISLSVVKTGSQPQQMKDIFMRANLSSKQAYVGQMLTYKVKLYLAL ELQRGVLNAPNLEGAQIKQLGEDKDSTDVVNGRRYRVIERNYAIVADQPGELTIDGASFAGDVMVQSRRNGAMFSFNESR PTQTQAPKMTVLIKPIPADYHGQWLVSDLVVLKEDWPETQTEFKVGDPITRTINLLASNADETSLPDIVIKSPSALKAYP EKPQRNTFLRDNQMVSQLTQTTAIVATQAGTYTLPEIKVPWWNPHLNKQQFATLPARTITVTGGAAIEPIQPQITTPSSN THAGFWPWISLVLGCLWVITLLLWLKERRNKQVAPNIESSAKAPLAVSGLTNLQTACHTKDPTGVLNALTRYYGELYQRP MTLSQIAATDINLSDCINQLQQAAYGANQQSSTVDFGQILSIAKMAKAETSPAKASALAKLNPS
Sequences:
>Translated_544_residues MVIRHIFLLAIIALTAAFPASAITSLQASVDRNPVMEGESLILTVTADDDLNSGKLDTSKLLKDFIVGRTSISRSKQIMN FDASNETRWQVLLSPKNIGTVTIPAFTIDGISSNPISLSVVKTGSQPQQMKDIFMRANLSSKQAYVGQMLTYKVKLYLAL ELQRGVLNAPNLEGAQIKQLGEDKDSTDVVNGRRYRVIERNYAIVADQPGELTIDGASFAGDVMVQSRRNGAMFSFNESR PTQTQAPKMTVLIKPIPADYHGQWLVSDLVVLKEDWPETQTEFKVGDPITRTINLLASNADETSLPDIVIKSPSALKAYP EKPQRNTFLRDNQMVSQLTQTTAIVATQAGTYTLPEIKVPWWNPHLNKQQFATLPARTITVTGGAAIEPIQPQITTPSSN THAGFWPWISLVLGCLWVITLLLWLKERRNKQVAPNIESSAKAPLAVSGLTNLQTACHTKDPTGVLNALTRYYGELYQRP MTLSQIAATDINLSDCINQLQQAAYGANQQSSTVDFGQILSIAKMAKAETSPAKASALAKLNPS >Mature_544_residues MVIRHIFLLAIIALTAAFPASAITSLQASVDRNPVMEGESLILTVTADDDLNSGKLDTSKLLKDFIVGRTSISRSKQIMN FDASNETRWQVLLSPKNIGTVTIPAFTIDGISSNPISLSVVKTGSQPQQMKDIFMRANLSSKQAYVGQMLTYKVKLYLAL ELQRGVLNAPNLEGAQIKQLGEDKDSTDVVNGRRYRVIERNYAIVADQPGELTIDGASFAGDVMVQSRRNGAMFSFNESR PTQTQAPKMTVLIKPIPADYHGQWLVSDLVVLKEDWPETQTEFKVGDPITRTINLLASNADETSLPDIVIKSPSALKAYP EKPQRNTFLRDNQMVSQLTQTTAIVATQAGTYTLPEIKVPWWNPHLNKQQFATLPARTITVTGGAAIEPIQPQITTPSSN THAGFWPWISLVLGCLWVITLLLWLKERRNKQVAPNIESSAKAPLAVSGLTNLQTACHTKDPTGVLNALTRYYGELYQRP MTLSQIAATDINLSDCINQLQQAAYGANQQSSTVDFGQILSIAKMAKAETSPAKASALAKLNPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59565; Mature: 59565
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIRHIFLLAIIALTAAFPASAITSLQASVDRNPVMEGESLILTVTADDDLNSGKLDTSK CHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHH LLKDFIVGRTSISRSKQIMNFDASNETRWQVLLSPKNIGTVTIPAFTIDGISSNPISLSV HHHHHHHCCHHHHHCHHHEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEE VKTGSQPQQMKDIFMRANLSSKQAYVGQMLTYKVKLYLALELQRGVLNAPNLEGAQIKQL EECCCCHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCHHHHHH GEDKDSTDVVNGRRYRVIERNYAIVADQPGELTIDGASFAGDVMVQSRRNGAMFSFNESR CCCCCCCCCCCCCEEEEEECCEEEEECCCCCEEECCCCCCCHHEEEECCCCCEEEECCCC PTQTQAPKMTVLIKPIPADYHGQWLVSDLVVLKEDWPETQTEFKVGDPITRTINLLASNA CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHCCC DETSLPDIVIKSPSALKAYPEKPQRNTFLRDNQMVSQLTQTTAIVATQAGTYTLPEIKVP CCCCCCCEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEECCEEECC WWNPHLNKQQFATLPARTITVTGGAAIEPIQPQITTPSSNTHAGFWPWISLVLGCLWVIT CCCCCCCHHHHHCCCCEEEEEECCCEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH LLLWLKERRNKQVAPNIESSAKAPLAVSGLTNLQTACHTKDPTGVLNALTRYYGELYQRP HHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC MTLSQIAATDINLSDCINQLQQAAYGANQQSSTVDFGQILSIAKMAKAETSPAKASALAK CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCC LNPS CCCC >Mature Secondary Structure MVIRHIFLLAIIALTAAFPASAITSLQASVDRNPVMEGESLILTVTADDDLNSGKLDTSK CHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHH LLKDFIVGRTSISRSKQIMNFDASNETRWQVLLSPKNIGTVTIPAFTIDGISSNPISLSV HHHHHHHCCHHHHHCHHHEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEE VKTGSQPQQMKDIFMRANLSSKQAYVGQMLTYKVKLYLALELQRGVLNAPNLEGAQIKQL EECCCCHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCHHHHHH GEDKDSTDVVNGRRYRVIERNYAIVADQPGELTIDGASFAGDVMVQSRRNGAMFSFNESR CCCCCCCCCCCCCEEEEEECCEEEEECCCCCEEECCCCCCCHHEEEECCCCCEEEECCCC PTQTQAPKMTVLIKPIPADYHGQWLVSDLVVLKEDWPETQTEFKVGDPITRTINLLASNA CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHCCC DETSLPDIVIKSPSALKAYPEKPQRNTFLRDNQMVSQLTQTTAIVATQAGTYTLPEIKVP CCCCCCCEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEECCEEECC WWNPHLNKQQFATLPARTITVTGGAAIEPIQPQITTPSSNTHAGFWPWISLVLGCLWVIT CCCCCCCHHHHHCCCCEEEEEECCCEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH LLLWLKERRNKQVAPNIESSAKAPLAVSGLTNLQTACHTKDPTGVLNALTRYYGELYQRP HHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC MTLSQIAATDINLSDCINQLQQAAYGANQQSSTVDFGQILSIAKMAKAETSPAKASALAK CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCC LNPS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA