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The map label for this gene is ycfD [H]

Identifier: 157962362

GI number: 157962362

Start: 3092865

End: 3093995

Strand: Direct

Name: ycfD [H]

Synonym: Spea_2541

Alternate gene names: 157962362

Gene position: 3092865-3093995 (Clockwise)

Preceding gene: 157962361

Following gene: 157962364

Centisome position: 59.77

GC content: 43.15

Gene sequence:

>1131_bases
ATGTTTAGTCTTAATTTCGATCCTACTGAATTTCTTAGCCAATACTGGCAAAAAAAGCCCATTTTAATTAAGAATGCTTT
CCCGAATTTTGAAGATCTCATTAGCGCAGATGAACTTGCTGGCCTTGCCTGTGAAGACGCTGTCGCATCAAGAGTGGTAG
TGACTAAACCTAATGACTGGCAGATAATCGAAGGACCTTTTGAAGACTACGATCAGTTTGGCGATCAAAACTGGCAATTA
TTGGTACAAGCCCTAAACCATTGGCATCCAGATTCAAGCGAACTCATTAATGCCTTTCGCTTTATTCCCGACTGGCGTTT
CGATGACTTAATGGTGTCTTTTGCCACTCCCGGTGGCGGCGTTGGCGCACACATCGATAACTATGATGTATTTATCATTC
AAGGTGAAGGACAGCGTCACTGGACTGTGGGCGATAAAGGCCAATATGCGCCAAAAAATAATGATCCTACCACCCCATTA
ATCGAGGGATTCGAGCCTATAATTGATGTGGTACTCGAAAAAGGTGATCTACTTTATATTCCACCTGGCTTTCCACACCA
AGGCCAAACAATTACCAACGCAATGAGTTACTCGATGGGTTTTCGCGCGCCAAGCCAGCAAGAGCTTTTCAGCGAAATAG
CCGATGCACTTATTGACAATAACACAGGGCTTAAACGTTTCACTTCGAGTAACGAGCCAGAGCAAGCCAGCCTAGTCAGT
ACAACGCATCAGCAAGAGATGATGGCGCTAATTGCCGAGCTTTCAAATGACCCAACTTCTTACCAAATTGTGCTTGGAAA
AATGCTAAGCCAAAACCGCTTTGAATTAGATATTTGTGAACCTGATGAAGCCTACACCGCAGAAGATATCAGTGACTATA
TTGCACAGGGTGCGCAATTATACCGTATAGGTGGCTTGAAATTACTTAAGCTCGAAGGCGATAGCATATCTCGCATATTT
GTTAATGGTGAACCGATAGAATACCCAGATGCTATTGAAGCTGATGTTCAGCAATTATGTGAGCGTTTCAGTTTTAACAA
TGAGCAGGCAGAGGCACTAATTCAGGCTCCAGGCACTCAAAACTTATTATTAGACTTACTAAACCGCGGGTATTTCTATT
TCGGTGAGTAA

Upstream 100 bases:

>100_bases
CTTTATTTTATCCATTTTCCGTCGAGCGTTTTTATAGAACTTTTTTCATCAAAGTTTTTCTATCAAACTATTTCTATCAA
TAAAGAGCAGCTAACTCACT

Downstream 100 bases:

>100_bases
TAGCTATAAAATTATTGCTATTCATCTCAATCAAAAAAGGCATCCTAGTGATGCCTTTTTAGTACCGTAAATGCTTGCCG
CTAAATGAACTTAAGCGCTT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MFSLNFDPTEFLSQYWQKKPILIKNAFPNFEDLISADELAGLACEDAVASRVVVTKPNDWQIIEGPFEDYDQFGDQNWQL
LVQALNHWHPDSSELINAFRFIPDWRFDDLMVSFATPGGGVGAHIDNYDVFIIQGEGQRHWTVGDKGQYAPKNNDPTTPL
IEGFEPIIDVVLEKGDLLYIPPGFPHQGQTITNAMSYSMGFRAPSQQELFSEIADALIDNNTGLKRFTSSNEPEQASLVS
TTHQQEMMALIAELSNDPTSYQIVLGKMLSQNRFELDICEPDEAYTAEDISDYIAQGAQLYRIGGLKLLKLEGDSISRIF
VNGEPIEYPDAIEADVQQLCERFSFNNEQAEALIQAPGTQNLLLDLLNRGYFYFGE

Sequences:

>Translated_376_residues
MFSLNFDPTEFLSQYWQKKPILIKNAFPNFEDLISADELAGLACEDAVASRVVVTKPNDWQIIEGPFEDYDQFGDQNWQL
LVQALNHWHPDSSELINAFRFIPDWRFDDLMVSFATPGGGVGAHIDNYDVFIIQGEGQRHWTVGDKGQYAPKNNDPTTPL
IEGFEPIIDVVLEKGDLLYIPPGFPHQGQTITNAMSYSMGFRAPSQQELFSEIADALIDNNTGLKRFTSSNEPEQASLVS
TTHQQEMMALIAELSNDPTSYQIVLGKMLSQNRFELDICEPDEAYTAEDISDYIAQGAQLYRIGGLKLLKLEGDSISRIF
VNGEPIEYPDAIEADVQQLCERFSFNNEQAEALIQAPGTQNLLLDLLNRGYFYFGE
>Mature_376_residues
MFSLNFDPTEFLSQYWQKKPILIKNAFPNFEDLISADELAGLACEDAVASRVVVTKPNDWQIIEGPFEDYDQFGDQNWQL
LVQALNHWHPDSSELINAFRFIPDWRFDDLMVSFATPGGGVGAHIDNYDVFIIQGEGQRHWTVGDKGQYAPKNNDPTTPL
IEGFEPIIDVVLEKGDLLYIPPGFPHQGQTITNAMSYSMGFRAPSQQELFSEIADALIDNNTGLKRFTSSNEPEQASLVS
TTHQQEMMALIAELSNDPTSYQIVLGKMLSQNRFELDICEPDEAYTAEDISDYIAQGAQLYRIGGLKLLKLEGDSISRIF
VNGEPIEYPDAIEADVQQLCERFSFNNEQAEALIQAPGTQNLLLDLLNRGYFYFGE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=375, Percent_Identity=42.9333333333333, Blast_Score=319, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42331; Mature: 42331

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLNFDPTEFLSQYWQKKPILIKNAFPNFEDLISADELAGLACEDAVASRVVVTKPNDW
CCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHCHHHHCCCHHHHHHHCEEEEECCCCC
QIIEGPFEDYDQFGDQNWQLLVQALNHWHPDSSELINAFRFIPDWRFDDLMVSFATPGGG
EEECCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCC
VGAHIDNYDVFIIQGEGQRHWTVGDKGQYAPKNNDPTTPLIEGFEPIIDVVLEKGDLLYI
CCCEECCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
PPGFPHQGQTITNAMSYSMGFRAPSQQELFSEIADALIDNNTGLKRFTSSNEPEQASLVS
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHH
TTHQQEMMALIAELSNDPTSYQIVLGKMLSQNRFELDICEPDEAYTAEDISDYIAQGAQL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEE
YRIGGLKLLKLEGDSISRIFVNGEPIEYPDAIEADVQQLCERFSFNNEQAEALIQAPGTQ
EEECCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCH
NLLLDLLNRGYFYFGE
HHHHHHHHCCEEEECC
>Mature Secondary Structure
MFSLNFDPTEFLSQYWQKKPILIKNAFPNFEDLISADELAGLACEDAVASRVVVTKPNDW
CCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHCHHHHCCCHHHHHHHCEEEEECCCCC
QIIEGPFEDYDQFGDQNWQLLVQALNHWHPDSSELINAFRFIPDWRFDDLMVSFATPGGG
EEECCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCC
VGAHIDNYDVFIIQGEGQRHWTVGDKGQYAPKNNDPTTPLIEGFEPIIDVVLEKGDLLYI
CCCEECCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
PPGFPHQGQTITNAMSYSMGFRAPSQQELFSEIADALIDNNTGLKRFTSSNEPEQASLVS
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHH
TTHQQEMMALIAELSNDPTSYQIVLGKMLSQNRFELDICEPDEAYTAEDISDYIAQGAQL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEE
YRIGGLKLLKLEGDSISRIFVNGEPIEYPDAIEADVQQLCERFSFNNEQAEALIQAPGTQ
EEECCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCH
NLLLDLLNRGYFYFGE
HHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]