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The map label for this gene is ydeF [H]

Identifier: 157962348

GI number: 157962348

Start: 3078453

End: 3079820

Strand: Direct

Name: ydeF [H]

Synonym: Spea_2527

Alternate gene names: 157962348

Gene position: 3078453-3079820 (Clockwise)

Preceding gene: 157962346

Following gene: 157962350

Centisome position: 59.49

GC content: 46.35

Gene sequence:

>1368_bases
ATGGGTACAATTTGGAGTCCCAACTTAGACAGCTATACCGGGGCTAAGTATTCCCGTCTCGCGCAAGCGGTGGAAGATGG
CATAAAAAACGGTGAGCTTATGCCAAACAGTAAGCTCCCACCTCAAAGGTTGCTTGCTGACAAATTGGGCGTCACTGTCG
GTACAGTCACCCGAGCTTATGCTCTGCTCGAACAACGAGGATATGTGCAGGCTAAGGTCGGCGCAGGAACCTACGTAAAA
GCCAGCGATTATCAAGCTGCTAATAAAGGGGCTGATTTTGCGACCTGCCAACAGCCATTTACCAATCAAGCTGCCATTTT
AAGTGATGCGCTCAACCAACTGGCAAAAACGCCACTTCGTCTGAGCCAATTGATGCAATACCACGCCGAGCCACTACGTG
AGCATCAGCTTACATTCAGCCAATGGCTACACAGACGTAATATCCCACAGTCTAGCGAGCAAATAGTATTTACCCATGGT
GCACAACAAGGTATTTTTTCAATCCTCAACGGTTTGATGCAGGCAGGTGAAATGCTACTTTGTGAGTCCAGCTGCTATCC
AGGCATTCATGTTGCGGCAGAGCAACTTGGGCTCAAGACGATGCCAGTATCATTGACAAATGAAGGTTTAGACTTAGCTG
AGTTAGCTGACAAACTCACTCAGTACCAACCAAAAGTACTGTACTTGACACCAAACAATCAAAACCCAACCTGTATTCAA
TACAGCGATACACAGCGTAAGAGCATTATTGATTTAGCTAGAAAACATCGAGTAGTGATCATCGAAGATGATGTCAATTA
CAGCCTTCCCTCTGAATGGCACACACCTATGTGGTCGCTTGATCAGCAAAGCGCTGATAACGAGCAACAGCAGTGTGTCA
TCTACCTGTCTAGCTTATCTAAAATGTTCTGTGGGGGTTTAAGGCAAGGCTTCTTGCTTATCCCCAGCAGACTTATTGGC
CCAGTGAAACAAGCCATATACAGCCAGTGCTGGATGGTCTCACCGTTAAATACCGAGCTTGCTTGCTCGATAATCGACAA
TAACGATTTTATGGGACAACGAGAGCAGCTTATAGCTGAAAGACAGAAGTTAGGTATTGCCATGGGGCTGCGACTCAAGC
TTACACAGAACTGGCGAGGGCTAAATGGCTGGTTGCAGCTCAAAGCGCCACTAAAGTCTCACCATGTGGTTACAGCTTTA
GCACAAAAAGGCATCCTTATCCGAAATGGCGATGACTTTAATAACCATGATAATTGCATCCGCATCAGTATCGGCGATAC
CCACGACGACAAACATTTTATAGAGCAACTGAGCATCATCGAGGCTAGCATACGAGAACTGAGTCAATCGGCCTACTCTG
TTGTATAA

Upstream 100 bases:

>100_bases
TCTTAACCCACACAGAATTGTATGAGTACAATACTTGACACAAAACAGCTGTAATCCGCATAATAATCGATACAAAGTCG
AATACAATGGTTTTATTGTT

Downstream 100 bases:

>100_bases
AAAGAGTTTACAGCCACAAGCTGACATTTGTAATCGACTAAAACCAAGACACAAAAAAGCCGCTATTTTAGCGGCTTTAA
GCAGTCTAAAAAAGCGTACC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MGTIWSPNLDSYTGAKYSRLAQAVEDGIKNGELMPNSKLPPQRLLADKLGVTVGTVTRAYALLEQRGYVQAKVGAGTYVK
ASDYQAANKGADFATCQQPFTNQAAILSDALNQLAKTPLRLSQLMQYHAEPLREHQLTFSQWLHRRNIPQSSEQIVFTHG
AQQGIFSILNGLMQAGEMLLCESSCYPGIHVAAEQLGLKTMPVSLTNEGLDLAELADKLTQYQPKVLYLTPNNQNPTCIQ
YSDTQRKSIIDLARKHRVVIIEDDVNYSLPSEWHTPMWSLDQQSADNEQQQCVIYLSSLSKMFCGGLRQGFLLIPSRLIG
PVKQAIYSQCWMVSPLNTELACSIIDNNDFMGQREQLIAERQKLGIAMGLRLKLTQNWRGLNGWLQLKAPLKSHHVVTAL
AQKGILIRNGDDFNNHDNCIRISIGDTHDDKHFIEQLSIIEASIRELSQSAYSVV

Sequences:

>Translated_455_residues
MGTIWSPNLDSYTGAKYSRLAQAVEDGIKNGELMPNSKLPPQRLLADKLGVTVGTVTRAYALLEQRGYVQAKVGAGTYVK
ASDYQAANKGADFATCQQPFTNQAAILSDALNQLAKTPLRLSQLMQYHAEPLREHQLTFSQWLHRRNIPQSSEQIVFTHG
AQQGIFSILNGLMQAGEMLLCESSCYPGIHVAAEQLGLKTMPVSLTNEGLDLAELADKLTQYQPKVLYLTPNNQNPTCIQ
YSDTQRKSIIDLARKHRVVIIEDDVNYSLPSEWHTPMWSLDQQSADNEQQQCVIYLSSLSKMFCGGLRQGFLLIPSRLIG
PVKQAIYSQCWMVSPLNTELACSIIDNNDFMGQREQLIAERQKLGIAMGLRLKLTQNWRGLNGWLQLKAPLKSHHVVTAL
AQKGILIRNGDDFNNHDNCIRISIGDTHDDKHFIEQLSIIEASIRELSQSAYSVV
>Mature_454_residues
GTIWSPNLDSYTGAKYSRLAQAVEDGIKNGELMPNSKLPPQRLLADKLGVTVGTVTRAYALLEQRGYVQAKVGAGTYVKA
SDYQAANKGADFATCQQPFTNQAAILSDALNQLAKTPLRLSQLMQYHAEPLREHQLTFSQWLHRRNIPQSSEQIVFTHGA
QQGIFSILNGLMQAGEMLLCESSCYPGIHVAAEQLGLKTMPVSLTNEGLDLAELADKLTQYQPKVLYLTPNNQNPTCIQY
SDTQRKSIIDLARKHRVVIIEDDVNYSLPSEWHTPMWSLDQQSADNEQQQCVIYLSSLSKMFCGGLRQGFLLIPSRLIGP
VKQAIYSQCWMVSPLNTELACSIIDNNDFMGQREQLIAERQKLGIAMGLRLKLTQNWRGLNGWLQLKAPLKSHHVVTALA
QKGILIRNGDDFNNHDNCIRISIGDTHDDKHFIEQLSIIEASIRELSQSAYSVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI33469970, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=24.7767857142857, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790797, Length=453, Percent_Identity=22.7373068432671, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788332, Length=299, Percent_Identity=26.7558528428094, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=211, Percent_Identity=24.1706161137441, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50811; Mature: 50680

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTIWSPNLDSYTGAKYSRLAQAVEDGIKNGELMPNSKLPPQRLLADKLGVTVGTVTRAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
ALLEQRGYVQAKVGAGTYVKASDYQAANKGADFATCQQPFTNQAAILSDALNQLAKTPLR
HHHHHCCCEEEEECCCEEEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCHHH
LSQLMQYHAEPLREHQLTFSQWLHRRNIPQSSEQIVFTHGAQQGIFSILNGLMQAGEMLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEE
CESSCYPGIHVAAEQLGLKTMPVSLTNEGLDLAELADKLTQYQPKVLYLTPNNQNPTCIQ
ECCCCCCCHHHHHHHCCCEECCEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEE
YSDTQRKSIIDLARKHRVVIIEDDVNYSLPSEWHTPMWSLDQQSADNEQQQCVIYLSSLS
ECCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
KMFCGGLRQGFLLIPSRLIGPVKQAIYSQCWMVSPLNTELACSIIDNNDFMGQREQLIAE
HHHHHHHCCCCEECCHHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCCCCHHHHHHHH
RQKLGIAMGLRLKLTQNWRGLNGWLQLKAPLKSHHVVTALAQKGILIRNGDDFNNHDNCI
HHHCCEEECEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCEE
RISIGDTHDDKHFIEQLSIIEASIRELSQSAYSVV
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GTIWSPNLDSYTGAKYSRLAQAVEDGIKNGELMPNSKLPPQRLLADKLGVTVGTVTRAY
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
ALLEQRGYVQAKVGAGTYVKASDYQAANKGADFATCQQPFTNQAAILSDALNQLAKTPLR
HHHHHCCCEEEEECCCEEEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCHHH
LSQLMQYHAEPLREHQLTFSQWLHRRNIPQSSEQIVFTHGAQQGIFSILNGLMQAGEMLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEE
CESSCYPGIHVAAEQLGLKTMPVSLTNEGLDLAELADKLTQYQPKVLYLTPNNQNPTCIQ
ECCCCCCCHHHHHHHCCCEECCEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEE
YSDTQRKSIIDLARKHRVVIIEDDVNYSLPSEWHTPMWSLDQQSADNEQQQCVIYLSSLS
ECCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
KMFCGGLRQGFLLIPSRLIGPVKQAIYSQCWMVSPLNTELACSIIDNNDFMGQREQLIAE
HHHHHHHCCCCEECCHHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCCCCHHHHHHHH
RQKLGIAMGLRLKLTQNWRGLNGWLQLKAPLKSHHVVTALAQKGILIRNGDDFNNHDNCI
HHHCCEEECEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCEE
RISIGDTHDDKHFIEQLSIIEASIRELSQSAYSVV
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]