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The map label for this gene is rbgA [H]

Identifier: 157962329

GI number: 157962329

Start: 3056971

End: 3057909

Strand: Direct

Name: rbgA [H]

Synonym: Spea_2508

Alternate gene names: 157962329

Gene position: 3056971-3057909 (Clockwise)

Preceding gene: 157962328

Following gene: 157962331

Centisome position: 59.08

GC content: 44.94

Gene sequence:

>939_bases
ATGGCAATTCAGTGGTATCCAGGACACATGCACAAAGCACGAAAAGAGATCGAAGAGGTAATGCCTCAAGTCGATTTAGT
GATCGAAGTGCTTGATGCAAGGATCCCTTACAGTAGTGAAAACCCTATGGTGCAAACACTACGTGGTGATAAACCATGTA
TTAAACTACTGAATAAATCAGACTTAGCCGATCCAGAAACAACGCAAAGATGGATTGAATACCTCGAGCGCGAGCAAGGC
GTAAAGGCGATGGCAATTACTACATTACAAGCTGGACAGGTTAAAAAAATCCCTGATTTATGTCGTAAGTTCGTACCAAG
CCGCGACAAGATCGAAAAAGATATTCGTACTATGATTATGGGGATCCCGAACGTGGGTAAATCTACCATTATCAATACTC
TAGCCGGTAGAATGATTGCGAAAACGGGTAACGAGCCTGCGGTAACTAAAACCCAACAACGCATCAACTTACGTAACGGT
ATCGTACTTTCTGACACCCCAGGTATTTTGTGGCCAAAAGTCGATAATGAAAAGAGCAGCTACCGCCTAGCAGTCACTGG
CGCGATTAAAGATACTGCGATGGAGTATGAAGATGTTGCCATGTTTGCAGCCGAGTATTTCCTTACGGCCTATCCAGAAG
CGATTGCTGAGCGTTACAAAATCAAGCAGATGCCTGACACAGACATTGAGCTACTAGAAGCGATTGGCCGTAACCGCGGC
GCCCTGCGCCCAGGTGGAAGAATCGATCTACATAAGGCATCAGAAGTGTTACTACATGATTTTCGCGCAGGAAGAATTGG
CCAGTTGTCGCTTGAGACGCCTGAAATGGCTGAAATCGAAAAAGCTGAAGTGGCTAAACTATTAGCAGAGAAAGAAGCAA
AAGAGGAAGCTAAACGTGAACAAGAGCGTTTAAAGCGTTCCGGTAAGCGTTTAAGCTAA

Upstream 100 bases:

>100_bases
AAGAGCTCAATAAGCGCCTTAGGGCGCTTTTTGTTTGTTAAACTTAAGCAGAACAAGGTAAAATCCCCTTAATTTAGTAA
TTTGATAGTAGAGCGCACAC

Downstream 100 bases:

>100_bases
ACTCAGTTTCAATAACTAAAAGGCGCTATAACGGCGCCTTTTTAATATCTAATCCTCTTCCTTTTACTGAGTAAAGCTTA
ATAGCAACAAACACTGCTTA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKSDLADPETTQRWIEYLEREQG
VKAMAITTLQAGQVKKIPDLCRKFVPSRDKIEKDIRTMIMGIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFLTAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPEMAEIEKAEVAKLLAEKEAKEEAKREQERLKRSGKRLS

Sequences:

>Translated_312_residues
MAIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKSDLADPETTQRWIEYLEREQG
VKAMAITTLQAGQVKKIPDLCRKFVPSRDKIEKDIRTMIMGIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFLTAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPEMAEIEKAEVAKLLAEKEAKEEAKREQERLKRSGKRLS
>Mature_311_residues
AIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKSDLADPETTQRWIEYLEREQGV
KAMAITTLQAGQVKKIPDLCRKFVPSRDKIEKDIRTMIMGIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNGI
VLSDTPGILWPKVDNEKSSYRLAVTGAIKDTAMEYEDVAMFAAEYFLTAYPEAIAERYKIKQMPDTDIELLEAIGRNRGA
LRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPEMAEIEKAEVAKLLAEKEAKEEAKREQERLKRSGKRLS

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=294, Percent_Identity=29.2517006802721, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI7019419, Length=256, Percent_Identity=30.859375, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI45593130, Length=277, Percent_Identity=24.9097472924188, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI45643129, Length=277, Percent_Identity=24.9097472924188, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI45643127, Length=277, Percent_Identity=24.9097472924188, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17534827, Length=272, Percent_Identity=29.7794117647059, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=30.5555555555556, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI32563985, Length=266, Percent_Identity=28.1954887218045, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71990926, Length=266, Percent_Identity=28.1954887218045, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI32563983, Length=266, Percent_Identity=28.1954887218045, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI25143545, Length=284, Percent_Identity=22.887323943662, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=284, Percent_Identity=22.887323943662, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=197, Percent_Identity=25.8883248730964, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=276, Percent_Identity=26.8115942028986, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6320842, Length=297, Percent_Identity=26.9360269360269, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323744, Length=241, Percent_Identity=28.6307053941909, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6321339, Length=162, Percent_Identity=32.0987654320988, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85815858, Length=301, Percent_Identity=27.5747508305648, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI28572990, Length=315, Percent_Identity=29.2063492063492, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI19922460, Length=302, Percent_Identity=28.1456953642384, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35251; Mature: 35120

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKS
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHCCC
DLADPETTQRWIEYLEREQGVKAMAITTLQAGQVKKIPDLCRKFVPSRDKIEKDIRTMIM
CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
GIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEKSS
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVAMFAAEYFLTAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPEMAEIEKAEVAKLLAEKEAKEEAKRE
CCCCCCCEEHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QERLKRSGKRLS
HHHHHHCCCCCC
>Mature Secondary Structure 
AIQWYPGHMHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQTLRGDKPCIKLLNKS
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHCCC
DLADPETTQRWIEYLEREQGVKAMAITTLQAGQVKKIPDLCRKFVPSRDKIEKDIRTMIM
CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
GIPNVGKSTIINTLAGRMIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEKSS
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVAMFAAEYFLTAYPEAIAERYKIKQMPDTDIELLEAIGRNRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
ALRPGGRIDLHKASEVLLHDFRAGRIGQLSLETPEMAEIEKAEVAKLLAEKEAKEEAKRE
CCCCCCCEEHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QERLKRSGKRLS
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]