| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is rnfC [H]
Identifier: 157962176
GI number: 157962176
Start: 2870373
End: 2872850
Strand: Direct
Name: rnfC [H]
Synonym: Spea_2355
Alternate gene names: 157962176
Gene position: 2870373-2872850 (Clockwise)
Preceding gene: 157962175
Following gene: 157962177
Centisome position: 55.47
GC content: 47.3
Gene sequence:
>2478_bases GTGTTAACTTTATTAGAGCAAATTGATAAAGGGACGCTTTGGCGCTCACATGGTGGTGTTCATCCTCCAGAATTAAAAAA TCTATCAAACAAAACGACGATTTCAGAGTTACCACTCGCGAGTCAATTCGTTTTACCACTTACCCAAGTTGGCGACAGCG CCCTACTCACGGTTAAGGTTGGCGATAGAGTGCTAAAAGGTCAGAGCCTGACATCGGGTACTAGCTTTGCTTATAGCCCT GTGCATGCACCTACGTCCGGTGTTATCAGCCAAATTCAGCCTATGCCAAGCAATCACCCTTCTGGCATTGCGGTATTAAG CTGCGTAATTGATGCCGATGGCTTAGATGAATCGGTAGAGATTCTAACGGCAGATGTTGCATCTTTAAGCAACCAAGAGA TCTTAAGCAAGATCCAGCAAGCAGGTATTGCAGGACTGGGCGGCGCAGCTTTTCCGACTCATATCAAGTTAAGCCCTGCC AGTGACATCGAACTAGTGATTATCAATGGTATCGAGTGCGAGCCTTACATTACCTCTGACGATCGTCTAATGCGTGAACA CAGCGATGACATCCTTGCTGGTATTGCGATTATCCATAAGCTACTCAAGCCAAAACGCATCATTATCGCCATCGAGGATA ATAAGCCCGAAGCAATTGAAGCGATGCAACATGCGCTTAATCGCAGCGAGTTAGTGACAGATAGCGCCAGGATCACTGCA GTTCCAACCAAATATCCATCTGGTGGTGAAAAACAGCTAATACAGATCTTAACTGGCCAAGAAGTGCCATCAGGCTCTAT TCCTGCCCAGCTCGGTATGTTAGTACAAAACGTCGGTACGGCTTACGCCATCCATGACGCAGTCAGTAATGGCCATGCTT TGACACGCCGTGTCGTCACAGTGACAGGCTTAAATAGCCAAACACCAGGCAACTATTGGGTACCCATTGGTACGCCAGTC AGCCACATTCTCAAGCAGCTTGGTTTTAATGGCGACTTAGCCACCGATAAAGTCATAATCGGTGGGCCTATGATGGGTCA CTCGCTACCCGATATTTCTGCTCCTGTGTTAAAAGGCACAAACTGCGTTCTGTTACCGAGCAGTGAAGAGATAGCGCCTG AACAACCAGAGAAACCTTGTATTCGCTGTGGCGAATGCGCCGTCGTCTGCCCTAGCCTGCTCTTGCCACAGCAACTATTT TGGCATGCAAAAGCTGAAGAATACGATAAAGCCTCAAGCTTTAACCTACACGACTGTATCGAATGCGGTTGCTGTAGCTT TGTTTGCCCAAGTGATATCCCATTAGTAGAGTACTACCGTATCGCCAAGTCAGCGATACGTACGCAAACAGAAGAGAAAA AACAAGCCGACTTTGCTAAACAGCGCTTCGAAGCTAGATTACAGCGTCTAGAAGAGGAGAAGCTTGCTCGCGAAGCCAAA GCTAAAGAGGCAGCAGAGCGCCGTAAGGGCAGTATGTCTAGCGGCGACAGAGACGCTGTTGCCGAGGCCATGGCCCGTAT TAAAGCTAAGAAAGCTGCCGATAGCCAGCAGGCCGAGGTCACAGCTTCTGCCGAGGCTCCTTCGGACAAGAAAGCTCAAG TTGCAGCAGCGATTGCCCGTGCCAAAGCCAAAAAATCAACTACCAATACAGAAATGAACACGGTAGATGATTCTGCTGAG TCTTCAGCAACAGATAAGAAAGCACAAATAGCTGCGGCAATTGCCCGTGCTAAAGCTAAAAAAGCTGCGCAGGCTGACAC AACTAATACAACTGAAGAGAGTGAAGCCAGCGGTTTAGACAAGGGGGAGGCGCGAGAGGCGCCAGTTGAAATGCCTGTAG AGATACAAGCTAACAACAAGAAAGCGCAAATAGCCGCAGCGATTGCACGTGCTAAGGCTAAGAAAGCTGCACAAGCTGAG AAAGCTCAAACTAGTAACTCCGTAAACTCAGAGACTTTAGAGCATGAGACTTCAGAATCTGTGCCTGCTGAAGATGCTAA GAAAGCACGCATTGCAGCAGCCGTCGCTAAAGCTAAGGCCAAAAAGCTAGCTTTAACGACTGAAGTTCAAGCCGCAAAAA CTCAAACTATAGATGCTCAATCTATAGAAGCGAAGGCTAGTGAAACGATAGACAGTGAGATATCAGAACCTCTGCCTGCT GAAGATGCCAAGAAAGCACGCATTGCAGCAGCCGTCGCTAAAGCTAAGGCCAAAAAGCTAGCTTTAACGACTGATGTTAA AACTGTAGAAGCTCAAGCTGCAGAAACTCAAACTATAGGTGCTCAATCTGTAGAAGCGAAGGCTAGTGAAGCTCAAGCCA TTAAACCTATAGATAGTAAAGCTGTAGACAGTGATACTTCAGAAACTGATTTTTCTGAACCTTTGTCAGCCGAAGATGCC AAGAAAGCACGCATCGCCGCAGCGGTTGCTAAGGCTAAAGCGAAAAAGATGCAACAAAAATTGCAGGAGAAGGAATAA
Upstream 100 bases:
>100_bases CTGTCGATTGTATCGATATGCTACCAGTAGAACAGACCACTAAGACCTGGAACTGGCAACTTAATGCCATTCCCGTCAAG CAGTTGCAAGAGGATAAGCC
Downstream 100 bases:
>100_bases ACCATGGCGTTTAAGTTAGCCTCATCACCTCATTTAAAGGTGCAACTACAAACCCAAAGTGTGATGCGCCGGGTTATTCT ATGTGCCCTGCCGGGTATTG
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MLTLLEQIDKGTLWRSHGGVHPPELKNLSNKTTISELPLASQFVLPLTQVGDSALLTVKVGDRVLKGQSLTSGTSFAYSP VHAPTSGVISQIQPMPSNHPSGIAVLSCVIDADGLDESVEILTADVASLSNQEILSKIQQAGIAGLGGAAFPTHIKLSPA SDIELVIINGIECEPYITSDDRLMREHSDDILAGIAIIHKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELVTDSARITA VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVSNGHALTRRVVTVTGLNSQTPGNYWVPIGTPV SHILKQLGFNGDLATDKVIIGGPMMGHSLPDISAPVLKGTNCVLLPSSEEIAPEQPEKPCIRCGECAVVCPSLLLPQQLF WHAKAEEYDKASSFNLHDCIECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK AKEAAERRKGSMSSGDRDAVAEAMARIKAKKAADSQQAEVTASAEAPSDKKAQVAAAIARAKAKKSTTNTEMNTVDDSAE SSATDKKAQIAAAIARAKAKKAAQADTTNTTEESEASGLDKGEAREAPVEMPVEIQANNKKAQIAAAIARAKAKKAAQAE KAQTSNSVNSETLEHETSESVPAEDAKKARIAAAVAKAKAKKLALTTEVQAAKTQTIDAQSIEAKASETIDSEISEPLPA EDAKKARIAAAVAKAKAKKLALTTDVKTVEAQAAETQTIGAQSVEAKASEAQAIKPIDSKAVDSDTSETDFSEPLSAEDA KKARIAAAVAKAKAKKMQQKLQEKE
Sequences:
>Translated_825_residues MLTLLEQIDKGTLWRSHGGVHPPELKNLSNKTTISELPLASQFVLPLTQVGDSALLTVKVGDRVLKGQSLTSGTSFAYSP VHAPTSGVISQIQPMPSNHPSGIAVLSCVIDADGLDESVEILTADVASLSNQEILSKIQQAGIAGLGGAAFPTHIKLSPA SDIELVIINGIECEPYITSDDRLMREHSDDILAGIAIIHKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELVTDSARITA VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVSNGHALTRRVVTVTGLNSQTPGNYWVPIGTPV SHILKQLGFNGDLATDKVIIGGPMMGHSLPDISAPVLKGTNCVLLPSSEEIAPEQPEKPCIRCGECAVVCPSLLLPQQLF WHAKAEEYDKASSFNLHDCIECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK AKEAAERRKGSMSSGDRDAVAEAMARIKAKKAADSQQAEVTASAEAPSDKKAQVAAAIARAKAKKSTTNTEMNTVDDSAE SSATDKKAQIAAAIARAKAKKAAQADTTNTTEESEASGLDKGEAREAPVEMPVEIQANNKKAQIAAAIARAKAKKAAQAE KAQTSNSVNSETLEHETSESVPAEDAKKARIAAAVAKAKAKKLALTTEVQAAKTQTIDAQSIEAKASETIDSEISEPLPA EDAKKARIAAAVAKAKAKKLALTTDVKTVEAQAAETQTIGAQSVEAKASEAQAIKPIDSKAVDSDTSETDFSEPLSAEDA KKARIAAAVAKAKAKKMQQKLQEKE >Mature_825_residues MLTLLEQIDKGTLWRSHGGVHPPELKNLSNKTTISELPLASQFVLPLTQVGDSALLTVKVGDRVLKGQSLTSGTSFAYSP VHAPTSGVISQIQPMPSNHPSGIAVLSCVIDADGLDESVEILTADVASLSNQEILSKIQQAGIAGLGGAAFPTHIKLSPA SDIELVIINGIECEPYITSDDRLMREHSDDILAGIAIIHKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELVTDSARITA VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVSNGHALTRRVVTVTGLNSQTPGNYWVPIGTPV SHILKQLGFNGDLATDKVIIGGPMMGHSLPDISAPVLKGTNCVLLPSSEEIAPEQPEKPCIRCGECAVVCPSLLLPQQLF WHAKAEEYDKASSFNLHDCIECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK AKEAAERRKGSMSSGDRDAVAEAMARIKAKKAADSQQAEVTASAEAPSDKKAQVAAAIARAKAKKSTTNTEMNTVDDSAE SSATDKKAQIAAAIARAKAKKAAQADTTNTTEESEASGLDKGEAREAPVEMPVEIQANNKKAQIAAAIARAKAKKAAQAE KAQTSNSVNSETLEHETSESVPAEDAKKARIAAAVAKAKAKKLALTTEVQAAKTQTIDAQSIEAKASETIDSEISEPLPA EDAKKARIAAAVAKAKAKKLALTTDVKTVEAQAAETQTIGAQSVEAKASEAQAIKPIDSKAVDSDTSETDFSEPLSAEDA KKARIAAAVAKAKAKKMQQKLQEKE
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=562, Percent_Identity=47.153024911032, Blast_Score=496, Evalue=1e-141,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 87470; Mature: 87470
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLLEQIDKGTLWRSHGGVHPPELKNLSNKTTISELPLASQFVLPLTQVGDSALLTVKV CCHHHHHHCCCCEECCCCCCCCHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEE GDRVLKGQSLTSGTSFAYSPVHAPTSGVISQIQPMPSNHPSGIAVLSCVIDADGLDESVE CCCHHCCCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHH ILTADVASLSNQEILSKIQQAGIAGLGGAAFPTHIKLSPASDIELVIINGIECEPYITSD HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCEECCC DRLMREHSDDILAGIAIIHKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELVTDSARITA HHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCHHHHCCCCCEEEE VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVSNGHALTRRVVT ECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHEEEEE VTGLNSQTPGNYWVPIGTPVSHILKQLGFNGDLATDKVIIGGPMMGHSLPDISAPVLKGT EECCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCC NCVLLPSSEEIAPEQPEKPCIRCGECAVVCPSLLLPQQLFWHAKAEEYDKASSFNLHDCI CEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHH ECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKEAAERRKGSMSSGDRDAVAEAMARIKAKKAADSQQAEVTASAEAPSDKKAQVAAAIAR HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH AKAKKSTTNTEMNTVDDSAESSATDKKAQIAAAIARAKAKKAAQADTTNTTEESEASGLD HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCC KGEAREAPVEMPVEIQANNKKAQIAAAIARAKAKKAAQAEKAQTSNSVNSETLEHETSES CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC VPAEDAKKARIAAAVAKAKAKKLALTTEVQAAKTQTIDAQSIEAKASETIDSEISEPLPA CCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC EDAKKARIAAAVAKAKAKKLALTTDVKTVEAQAAETQTIGAQSVEAKASEAQAIKPIDSK CHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC AVDSDTSETDFSEPLSAEDAKKARIAAAVAKAKAKKMQQKLQEKE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLTLLEQIDKGTLWRSHGGVHPPELKNLSNKTTISELPLASQFVLPLTQVGDSALLTVKV CCHHHHHHCCCCEECCCCCCCCHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEE GDRVLKGQSLTSGTSFAYSPVHAPTSGVISQIQPMPSNHPSGIAVLSCVIDADGLDESVE CCCHHCCCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHH ILTADVASLSNQEILSKIQQAGIAGLGGAAFPTHIKLSPASDIELVIINGIECEPYITSD HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCEECCC DRLMREHSDDILAGIAIIHKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELVTDSARITA HHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCHHHHCCCCCEEEE VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVSNGHALTRRVVT ECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHEEEEE VTGLNSQTPGNYWVPIGTPVSHILKQLGFNGDLATDKVIIGGPMMGHSLPDISAPVLKGT EECCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCC NCVLLPSSEEIAPEQPEKPCIRCGECAVVCPSLLLPQQLFWHAKAEEYDKASSFNLHDCI CEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHH ECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKEAAERRKGSMSSGDRDAVAEAMARIKAKKAADSQQAEVTASAEAPSDKKAQVAAAIAR HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH AKAKKSTTNTEMNTVDDSAESSATDKKAQIAAAIARAKAKKAAQADTTNTTEESEASGLD HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCC KGEAREAPVEMPVEIQANNKKAQIAAAIARAKAKKAAQAEKAQTSNSVNSETLEHETSES CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC VPAEDAKKARIAAAVAKAKAKKLALTTEVQAAKTQTIDAQSIEAKASETIDSEISEPLPA CCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC EDAKKARIAAAVAKAKAKKLALTTDVKTVEAQAAETQTIGAQSVEAKASEAQAIKPIDSK CHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC AVDSDTSETDFSEPLSAEDAKKARIAAAVAKAKAKKMQQKLQEKE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]