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The map label for this gene is rnfD

Identifier: 157962177

GI number: 157962177

Start: 2872854

End: 2873906

Strand: Direct

Name: rnfD

Synonym: Spea_2356

Alternate gene names: 157962177

Gene position: 2872854-2873906 (Clockwise)

Preceding gene: 157962176

Following gene: 157962178

Centisome position: 55.52

GC content: 47.39

Gene sequence:

>1053_bases
ATGGCGTTTAAGTTAGCCTCATCACCTCATTTAAAGGTGCAACTACAAACCCAAAGTGTGATGCGCCGGGTTATTCTATG
TGCCCTGCCGGGTATTGCAGCTCAGTGTTATTTTTTCGGCTTTGGCGTACTCATACAAGTTATGTTGGCTATTGTTGTTG
CATTAACCGCAGAAGCAGCAGTACTTGCGTTAAGAAAACGCGCGGTACTTTCTACTATTAGCGATAACAGCGCCTTATTA
ACGGCAATCTTAATTGGTGTCGCCATACCGCCTATCGCTCCATGGTGGTTAGTGGTGATTGGTACCTTGTTTGCGATTGT
ACTCGTTAAGCAGCTTTACGGTGGTCTAGGGCAAAATATCTTCAACCCGGCAATGGCCGCTTACGTCATGCTGCTTATCT
CGTTCCCGGTGCAGATGACAAGCTGGTCAATTCCAACGGCGATTGCTCAAAACCCGATGGATATTGGCTTAACGCTACAG
GCAATATTTGGCTCGATGAGCGCCGAGCAATTAAGTCTTTATAAACTCGGTTTTGACGGCGTAGCTATGGCAACCCCGCT
CGATACTGTTAAGACCGACCTATCTTTAGGCCTAACGACCTCAGAAAGCTTAACTAAAGCCATTTTCAGCGATGGCTATG
GCGTAGGTTGGTTCTGGGTCAACATGGCTTACCTAGCGGGCGGCCTTATTATGCTGAAGCTAAAAGTGATCCGCTGGCAC
ATCAGTTTCGCCATTCTAGGTTCACTCTTCGTCTGTAGCAGTTTTGGTTACCTGTTAAGCCCTGATACTCATGTAGGTCC
ACTACTGCAGCTATTTTCAGGTGCCACCATGATTGCGGCATTTTTTATCGCAACTGACCCTGTAACGGCCGCAACCAGTG
TTAAAGGACGCCTGTTGTTTGGCACACTAATAGGTGTGATGGTCTATGTTATTCGTACCTATGGTGGCTACCCAGACGCT
TTCGCTTTTGCCGTTTTACTGGCCAATCTATGTGCGCCATTTATTGATTATTACGTCAAGCCGCGTACTTATGGACACCG
CACGGGCAACTGA

Upstream 100 bases:

>100_bases
TTTGTCAGCCGAAGATGCCAAGAAAGCACGCATCGCCGCAGCGGTTGCTAAGGCTAAAGCGAAAAAGATGCAACAAAAAT
TGCAGGAGAAGGAATAAACC

Downstream 100 bases:

>100_bases
GCATAAAGAGAATTTATTTTGAAAAAATCAATGTTAAAGAATGGTTTGCTTCTAGGTCTATTTGCACTCTTGTGTACTGG
CTTAGTCGCTGTGGTAAACC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MAFKLASSPHLKVQLQTQSVMRRVILCALPGIAAQCYFFGFGVLIQVMLAIVVALTAEAAVLALRKRAVLSTISDNSALL
TAILIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNIFNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQ
AIFGSMSAEQLSLYKLGFDGVAMATPLDTVKTDLSLGLTTSESLTKAIFSDGYGVGWFWVNMAYLAGGLIMLKLKVIRWH
ISFAILGSLFVCSSFGYLLSPDTHVGPLLQLFSGATMIAAFFIATDPVTAATSVKGRLLFGTLIGVMVYVIRTYGGYPDA
FAFAVLLANLCAPFIDYYVKPRTYGHRTGN

Sequences:

>Translated_350_residues
MAFKLASSPHLKVQLQTQSVMRRVILCALPGIAAQCYFFGFGVLIQVMLAIVVALTAEAAVLALRKRAVLSTISDNSALL
TAILIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNIFNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQ
AIFGSMSAEQLSLYKLGFDGVAMATPLDTVKTDLSLGLTTSESLTKAIFSDGYGVGWFWVNMAYLAGGLIMLKLKVIRWH
ISFAILGSLFVCSSFGYLLSPDTHVGPLLQLFSGATMIAAFFIATDPVTAATSVKGRLLFGTLIGVMVYVIRTYGGYPDA
FAFAVLLANLCAPFIDYYVKPRTYGHRTGN
>Mature_349_residues
AFKLASSPHLKVQLQTQSVMRRVILCALPGIAAQCYFFGFGVLIQVMLAIVVALTAEAAVLALRKRAVLSTISDNSALLT
AILIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNIFNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQA
IFGSMSAEQLSLYKLGFDGVAMATPLDTVKTDLSLGLTTSESLTKAIFSDGYGVGWFWVNMAYLAGGLIMLKLKVIRWHI
SFAILGSLFVCSSFGYLLSPDTHVGPLLQLFSGATMIAAFFIATDPVTAATSVKGRLLFGTLIGVMVYVIRTYGGYPDAF
AFAVLLANLCAPFIDYYVKPRTYGHRTGN

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=54.8295454545455, Blast_Score=389, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_SHEPA (A8H539)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001502211.1
- STRING:   A8H539
- GeneID:   5662749
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_2356
- NMPDR:   fig|398579.3.peg.2024
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- ProtClustDB:   PRK00816
- BioCyc:   SPEA398579:SPEA_2356-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 37616; Mature: 37485

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x40aec340)-; HASH(0x1b7c1824)-; HASH(0x1be12140)-; HASH(0x1baa0ea0)-; HASH(0x1b7ef09c)-; HASH(0x1b6bc6cc)-; HASH(0x1befc87c)-; HASH(0x1bcad924)-; HASH(0x1a9ca9e0)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKLASSPHLKVQLQTQSVMRRVILCALPGIAAQCYFFGFGVLIQVMLAIVVALTAEAA
CCEECCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLALRKRAVLSTISDNSALLTAILIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQAIFGSMSAEQLSLYKLGFDG
HHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHEEECCCC
VAMATPLDTVKTDLSLGLTTSESLTKAIFSDGYGVGWFWVNMAYLAGGLIMLKLKVIRWH
EECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
ISFAILGSLFVCSSFGYLLSPDTHVGPLLQLFSGATMIAAFFIATDPVTAATSVKGRLLF
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCCHHHH
GTLIGVMVYVIRTYGGYPDAFAFAVLLANLCAPFIDYYVKPRTYGHRTGN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure 
AFKLASSPHLKVQLQTQSVMRRVILCALPGIAAQCYFFGFGVLIQVMLAIVVALTAEAA
CEECCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLALRKRAVLSTISDNSALLTAILIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQAIFGSMSAEQLSLYKLGFDG
HHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHEEECCCC
VAMATPLDTVKTDLSLGLTTSESLTKAIFSDGYGVGWFWVNMAYLAGGLIMLKLKVIRWH
EECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
ISFAILGSLFVCSSFGYLLSPDTHVGPLLQLFSGATMIAAFFIATDPVTAATSVKGRLLF
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCCHHHH
GTLIGVMVYVIRTYGGYPDAFAFAVLLANLCAPFIDYYVKPRTYGHRTGN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA