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The map label for this gene is rnfB

Identifier: 157962175

GI number: 157962175

Start: 2869810

End: 2870379

Strand: Direct

Name: rnfB

Synonym: Spea_2354

Alternate gene names: 157962175

Gene position: 2869810-2870379 (Clockwise)

Preceding gene: 157962174

Following gene: 157962176

Centisome position: 55.46

GC content: 47.89

Gene sequence:

>570_bases
ATGTCAGCTATTGTCATTGCTATTGTTGTACTCACAATACTCGCGCTCGTATTCGGTGTATTGCTGGGCTTTGCTGCCGA
AAAATTTAAAGTTGAAGGCAACCCCCTAACAGATCAAATTGAAGCACTATTACCACAAACCCAGTGTGGCCAATGTGGTT
ACCCTGGCTGTCGCCCCTATGCAGAAGCCATTGCGAATGGCGACAAAGTCAACAAGTGTCCTCCTGGTGGCGCTGCAACC
ATGGAAAAGCTCGCCGATCTTATGGGCGTCGAACCTGAGCCACTCAATGTCACTGAAGCTGTGCAAATAAAAAAGGTCGC
ATACATACGTGAAGATGAATGTATTGGCTGTACAAAGTGCATACAGGCCTGCCCCGTCGACGCGATTTTGGGCTCCGGAA
AATTAATGCATACCGTCATTACCGATTATTGTACGGGCTGTGACCTATGTGTTGCGCCTTGCCCTGTCGATTGTATCGAT
ATGCTACCAGTAGAACAGACCACTAAGACCTGGAACTGGCAACTTAATGCCATTCCCGTCAAGCAGTTGCAAGAGGATAA
GCCGTGTTAA

Upstream 100 bases:

>100_bases
CCGATGTTCCCACACCTTTTAAAGGTGGGGCCATTGCTATGGTTACCGCAGGACTAATGTCACTCGCGTTTATGGGATTC
ACAGGGTTGGTTAAATAAAC

Downstream 100 bases:

>100_bases
CTTTATTAGAGCAAATTGATAAAGGGACGCTTTGGCGCTCACATGGTGGTGTTCATCCTCCAGAATTAAAAAATCTATCA
AACAAAACGACGATTTCAGA

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSAIVIAIVVLTILALVFGVLLGFAAEKFKVEGNPLTDQIEALLPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGAAT
MEKLADLMGVEPEPLNVTEAVQIKKVAYIREDECIGCTKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCID
MLPVEQTTKTWNWQLNAIPVKQLQEDKPC

Sequences:

>Translated_189_residues
MSAIVIAIVVLTILALVFGVLLGFAAEKFKVEGNPLTDQIEALLPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGAAT
MEKLADLMGVEPEPLNVTEAVQIKKVAYIREDECIGCTKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCID
MLPVEQTTKTWNWQLNAIPVKQLQEDKPC
>Mature_188_residues
SAIVIAIVVLTILALVFGVLLGFAAEKFKVEGNPLTDQIEALLPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGAATM
EKLADLMGVEPEPLNVTEAVQIKKVAYIREDECIGCTKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDM
LPVEQTTKTWNWQLNAIPVKQLQEDKPC

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=184, Percent_Identity=56.5217391304348, Blast_Score=228, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_SHEPA (A8H537)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001502209.1
- ProteinModelPortal:   A8H537
- SMR:   A8H537
- STRING:   A8H537
- GeneID:   5662747
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_2354
- NMPDR:   fig|398579.3.peg.2022
- eggNOG:   COG2878
- HOGENOM:   HBG549899
- OMA:   ITKCVPG
- ProtClustDB:   PRK05113
- BioCyc:   SPEA398579:SPEA_2354-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20257; Mature: 20126

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
7.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIVIAIVVLTILALVFGVLLGFAAEKFKVEGNPLTDQIEALLPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKVNKCPPGGAATMEKLADLMGVEPEPLNVTEAVQIKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDMLPVEQTTKTWNWQLNAIPV
HHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCH
KQLQEDKPC
HHHCCCCCC
>Mature Secondary Structure 
SAIVIAIVVLTILALVFGVLLGFAAEKFKVEGNPLTDQIEALLPQTQCGQCGYPGCRPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKVNKCPPGGAATMEKLADLMGVEPEPLNVTEAVQIKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDMLPVEQTTKTWNWQLNAIPV
HHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCH
KQLQEDKPC
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA