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The map label for this gene is oprF [H]

Identifier: 157960967

GI number: 157960967

Start: 1375692

End: 1376288

Strand: Direct

Name: oprF [H]

Synonym: Spea_1139

Alternate gene names: 157960967

Gene position: 1375692-1376288 (Clockwise)

Preceding gene: 157960966

Following gene: 157960968

Centisome position: 26.59

GC content: 46.9

Gene sequence:

>597_bases
ATGATAGCAAAGTTAGCGCTACTTTTGATTGTTAGCACACTCCTGTCCACGCCCCTTGTGACCAAGCAGTGGCAAGATAG
TGATCTTGATGGTGTGCCAGATCTGAAAGATGCTTGTGCAGCGACGCCGCCAAACCGTGTTGTCGATGCGAAGGGCTGTG
ACAAAGCATTGCTTAATAAGCGAGGGCCGATGCTATCGATTTTGCCTGACTTATGCCTAAGGACGAGTGATGGTAAGCGA
TATCCTGCAGCCTGTAGCAAGCTGTCATCTATTTCGGTTAAGTTTGGGTTTGCCCAAGCAGATATTCTGCCTAGCCAAGA
GCAGACGATTGAGGTGATTGCGCGCTGGCTTAAATCAACAAGGGTAAGCATACAGCTCGTAGGTCACACAGATTCTATTG
GGGATGCAAGTTTTAATCTGCAGTTATCACTCAAGAGGGCTGAGCAAGTAAAAAAAGTATTCGTCGAGCAGTTTGGATTT
GCTGCCGATAGATTTCAAATTAACGGTGTGGGGAGCTCGCTTCCCGTTGCTAATAATCAAACCGCGTTCGGCCGTGAACA
GAATCGACGCGTTGAGTTTTTAGTTATTGTTCAATAG

Upstream 100 bases:

>100_bases
TATTAATCATTGATATCGGCTGTGAATACAATTATATGCGGTTGAATATGACGCTTATCATCTAAACCATAGCAGAGTGT
AACGGTTTGTCAGGTGAAAC

Downstream 100 bases:

>100_bases
TTATTTCTTAAATTTGAGGGAGTATATAAATGGATAACTTGCAAGGGTTAATGGAGCAAGCGCCTGAACTGATCGTCACC
TACGGTATGAAAGTGCTGTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MIAKLALLLIVSTLLSTPLVTKQWQDSDLDGVPDLKDACAATPPNRVVDAKGCDKALLNKRGPMLSILPDLCLRTSDGKR
YPAACSKLSSISVKFGFAQADILPSQEQTIEVIARWLKSTRVSIQLVGHTDSIGDASFNLQLSLKRAEQVKKVFVEQFGF
AADRFQINGVGSSLPVANNQTAFGREQNRRVEFLVIVQ

Sequences:

>Translated_198_residues
MIAKLALLLIVSTLLSTPLVTKQWQDSDLDGVPDLKDACAATPPNRVVDAKGCDKALLNKRGPMLSILPDLCLRTSDGKR
YPAACSKLSSISVKFGFAQADILPSQEQTIEVIARWLKSTRVSIQLVGHTDSIGDASFNLQLSLKRAEQVKKVFVEQFGF
AADRFQINGVGSSLPVANNQTAFGREQNRRVEFLVIVQ
>Mature_198_residues
MIAKLALLLIVSTLLSTPLVTKQWQDSDLDGVPDLKDACAATPPNRVVDAKGCDKALLNKRGPMLSILPDLCLRTSDGKR
YPAACSKLSSISVKFGFAQADILPSQEQTIEVIARWLKSTRVSIQLVGHTDSIGDASFNLQLSLKRAEQVKKVFVEQFGF
AADRFQINGVGSSLPVANNQTAFGREQNRRVEFLVIVQ

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=35.9223300970874, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788957, Length=104, Percent_Identity=36.5384615384615, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 21627; Mature: 21627

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKLALLLIVSTLLSTPLVTKQWQDSDLDGVPDLKDACAATPPNRVVDAKGCDKALLNK
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCHHHHHC
RGPMLSILPDLCLRTSDGKRYPAACSKLSSISVKFGFAQADILPSQEQTIEVIARWLKST
CCCCHHHHHHHHEECCCCCCCCHHHHHHHHCEEEECCCHHCCCCCHHHHHHHHHHHHHCC
RVSIQLVGHTDSIGDASFNLQLSLKRAEQVKKVFVEQFGFAADRFQINGVGSSLPVANNQ
CEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
TAFGREQNRRVEFLVIVQ
CCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MIAKLALLLIVSTLLSTPLVTKQWQDSDLDGVPDLKDACAATPPNRVVDAKGCDKALLNK
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCHHHHHC
RGPMLSILPDLCLRTSDGKRYPAACSKLSSISVKFGFAQADILPSQEQTIEVIARWLKST
CCCCHHHHHHHHEECCCCCCCCHHHHHHHHCEEEECCCHHCCCCCHHHHHHHHHHHHHCC
RVSIQLVGHTDSIGDASFNLQLSLKRAEQVKKVFVEQFGFAADRFQINGVGSSLPVANNQ
CEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
TAFGREQNRRVEFLVIVQ
CCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1898935 [H]