Click here to switch to the map view.

The map label for this gene is rfaQ [C]

Identifier: 157373067

GI number: 157373067

Start: 5355780

End: 5356793

Strand: Reverse

Name: rfaQ [C]

Synonym: Spro_4835

Alternate gene names: 157373067

Gene position: 5356793-5355780 (Counterclockwise)

Preceding gene: 157373071

Following gene: 157373063

Centisome position: 98.31

GC content: 50.1

Gene sequence:

>1014_bases
ATGAAGAATATTTTAATTATTCGCCGTGACAATATTGGCGATCTTGTTTGTACCACTCCGCTGATCGAAGGGGTGAAAAT
TGCCTATCCGGATGCCAAACTTTATCTGTTAATCAATAAAGTCAGTCAGGATGTTGTTAAAAATAACCCGCACCTTGAAA
AGGTCTTCGTCTATAAAAAGGCAAAGCACAAGGCGAAAAATGAAACCACATTGGGGGTTTATTTCGAACGCCTGATGATT
TTTCTTAAATTGCGTAAAATAAAATTTGATGCGGCGATCCTGGCCAACCCGGTTCCCTGCAAGTACAGCCTGCGATTGGC
AAAAATGGCGGGTATCGGCAATATTATTGGTGCAGATTTGGGTACGCCTGAGATTCATCATCCTTTTCGTAAGGAGAATT
TCAGCGGCAAGCATCAGGTAGAGCACACCTACAGCTACCTTTCGGCGATTACCGACCAGCGTATTCCCATCCCCCCGGTG
CGGGTGTACCTGACGGCTGAAGAGCGCCAGCAGGCGGCGCAGCGTTTGCAACAATGCCTGCCGCCGGTCGAGCGAGTTTT
CGCGGTTCATATCAGTAGCCGCAGCCCTAAACGGCGTTGGCCGATCGAGCGCTATGCCGAAATTATCAACCGCTTACTCG
CCGAACAGAATACGGCGATACTGATTTTCTGGTCGCCACAGGGCACGCTAACGCCGGATGATGTCGGCGATCAGAAACGC
GCAGAGCAGTTGTTGGCGTTATGTCAGAGTGAGCGCGTGGCGCTGTACCCAACGGCGTCGGTGCGTGAACTGCTGGCCGG
TTTTGATTTATGCGACAGAGTGCTGTGCAGCGATGGCGGGCAGATGCATCTGGCGGCGGCGTTGAATAAAGATATGGTGG
TGTTCTTTGGCGATACGGATAAAGAATCCTGGCATCCATGGTCTGGACGCTATCAGATTCTGCAAACCGAATCGGGCGAC
TGTATTGATGTTCCTGTGGAAGACGTCTGGCAAAAAATACAGGCGCTAAATTAA

Upstream 100 bases:

>100_bases
ATTCAGAATAGTACCATAACTGGAAGGGAAAGGCGCTAATTTGGTAACCTTGGGTGTCAGTTTCAGACAACAGGCGAGAG
ATTTCGCTGATAGGCTTGGA

Downstream 100 bases:

>100_bases
TTAACTATAAGGCAGGGATCCCCTGCCTTATTTATTTCTTGAGTGCCAGGTATTGCTGACAAATAGGCTCTAGTCCATAG
CTCAACAGTTGTTGGTAATT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: ADP-HeptoseLPS Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase III; Sugar Transferase; Lipopolysaccharide Heptosyltransferase II; Heptosyliii Transferase; Heptosyl III Transferase WaaQ; Heptosyl Transferase; Family 9 Glycosyl Transferase; Glycosyl Transferase

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKNILIIRRDNIGDLVCTTPLIEGVKIAYPDAKLYLLINKVSQDVVKNNPHLEKVFVYKKAKHKAKNETTLGVYFERLMI
FLKLRKIKFDAAILANPVPCKYSLRLAKMAGIGNIIGADLGTPEIHHPFRKENFSGKHQVEHTYSYLSAITDQRIPIPPV
RVYLTAEERQQAAQRLQQCLPPVERVFAVHISSRSPKRRWPIERYAEIINRLLAEQNTAILIFWSPQGTLTPDDVGDQKR
AEQLLALCQSERVALYPTASVRELLAGFDLCDRVLCSDGGQMHLAAALNKDMVVFFGDTDKESWHPWSGRYQILQTESGD
CIDVPVEDVWQKIQALN

Sequences:

>Translated_337_residues
MKNILIIRRDNIGDLVCTTPLIEGVKIAYPDAKLYLLINKVSQDVVKNNPHLEKVFVYKKAKHKAKNETTLGVYFERLMI
FLKLRKIKFDAAILANPVPCKYSLRLAKMAGIGNIIGADLGTPEIHHPFRKENFSGKHQVEHTYSYLSAITDQRIPIPPV
RVYLTAEERQQAAQRLQQCLPPVERVFAVHISSRSPKRRWPIERYAEIINRLLAEQNTAILIFWSPQGTLTPDDVGDQKR
AEQLLALCQSERVALYPTASVRELLAGFDLCDRVLCSDGGQMHLAAALNKDMVVFFGDTDKESWHPWSGRYQILQTESGD
CIDVPVEDVWQKIQALN
>Mature_337_residues
MKNILIIRRDNIGDLVCTTPLIEGVKIAYPDAKLYLLINKVSQDVVKNNPHLEKVFVYKKAKHKAKNETTLGVYFERLMI
FLKLRKIKFDAAILANPVPCKYSLRLAKMAGIGNIIGADLGTPEIHHPFRKENFSGKHQVEHTYSYLSAITDQRIPIPPV
RVYLTAEERQQAAQRLQQCLPPVERVFAVHISSRSPKRRWPIERYAEIINRLLAEQNTAILIFWSPQGTLTPDDVGDQKR
AEQLLALCQSERVALYPTASVRELLAGFDLCDRVLCSDGGQMHLAAALNKDMVVFFGDTDKESWHPWSGRYQILQTESGD
CIDVPVEDVWQKIQALN

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38314; Mature: 38314

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNILIIRRDNIGDLVCTTPLIEGVKIAYPDAKLYLLINKVSQDVVKNNPHLEKVFVYKK
CCCEEEEEECCCCCEEECCHHHCCEEEECCCCEEEEEEEHHHHHHHHCCCCHHHEEEEHH
AKHKAKNETTLGVYFERLMIFLKLRKIKFDAAILANPVPCKYSLRLAKMAGIGNIIGADL
HHHHCCCCCHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCCHHHHHHHHHCCCCHHCCCC
GTPEIHHPFRKENFSGKHQVEHTYSYLSAITDQRIPIPPVRVYLTAEERQQAAQRLQQCL
CCCHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHC
PPVERVFAVHISSRSPKRRWPIERYAEIINRLLAEQNTAILIFWSPQGTLTPDDVGDQKR
CHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHH
AEQLLALCQSERVALYPTASVRELLAGFDLCDRVLCSDGGQMHLAAALNKDMVVFFGDTD
HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCC
KESWHPWSGRYQILQTESGDCIDVPVEDVWQKIQALN
CCCCCCCCCCEEEEEECCCCEEECCHHHHHHHHHCCC
>Mature Secondary Structure
MKNILIIRRDNIGDLVCTTPLIEGVKIAYPDAKLYLLINKVSQDVVKNNPHLEKVFVYKK
CCCEEEEEECCCCCEEECCHHHCCEEEECCCCEEEEEEEHHHHHHHHCCCCHHHEEEEHH
AKHKAKNETTLGVYFERLMIFLKLRKIKFDAAILANPVPCKYSLRLAKMAGIGNIIGADL
HHHHCCCCCHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCCHHHHHHHHHCCCCHHCCCC
GTPEIHHPFRKENFSGKHQVEHTYSYLSAITDQRIPIPPVRVYLTAEERQQAAQRLQQCL
CCCHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHC
PPVERVFAVHISSRSPKRRWPIERYAEIINRLLAEQNTAILIFWSPQGTLTPDDVGDQKR
CHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHH
AEQLLALCQSERVALYPTASVRELLAGFDLCDRVLCSDGGQMHLAAALNKDMVVFFGDTD
HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCC
KESWHPWSGRYQILQTESGDCIDVPVEDVWQKIQALN
CCCCCCCCCCEEEEEECCCCEEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA