Click here to switch to the map view.

The map label for this gene is rhaS [H]

Identifier: 157372919

GI number: 157372919

Start: 5178365

End: 5179228

Strand: Direct

Name: rhaS [H]

Synonym: Spro_4687

Alternate gene names: 157372919

Gene position: 5178365-5179228 (Clockwise)

Preceding gene: 157372916

Following gene: 157372921

Centisome position: 95.04

GC content: 55.67

Gene sequence:

>864_bases
ATGGGATCTGATGGATTAGTCTATTCGGACGAAAAAGAATTACAGCTATCTTCCTGTTGCTGGGACTATGGTCGGGTCGA
TCGCGTGCAAGTCAGCGGCCCCCATCAGGCGCGCCTGGTTCGTCCAGCACACACGTTAATCGTCTATGACGGTTACCACT
CGGCCGATGGCAACACCACCATCAACGGGGATGTCTGGTTTGACCAAAAACGCACGCCGGCAACCCGAGTGATAGGCCAG
GTTGCCGATATCATTCCATCCGGATGCGATTTTGACGCCATCAGCTATGCCGAAGGCACCCTGAGTTATACGGCAATCTC
CATTTCCCCGCGGCTGATTGAACAAATGCCGGGTGGGAAGGCCGGCCTGATTATCGAACCCGGAGCAAATCTGCGTAATC
CGCTACTTAAACAACTGTGTCTTGGCCTGCAGGAAAGTGACAGCGAGTTGCATGCTTCATCACTGATGATGGCGATGCTG
GCAGAAGCGGCGCGTTATCAGCACGCGGCAACGCCTGATGGGTTACACCGGGAAACGCTTTCCCGGCCAGTGCGCGAACG
GTTGGCCAGTTATATCGAGGACAGTCTGGGGGAGAATATTACCTTGCAGGCGATGGCGCAGATTGCCGAACTGAGCATCT
TTCATTTTTCGCGTGCTTTCCGGCAACACTTTGGTTTACCGCCCTATCAATACGTCTTATCGCGGCGCCTGGAACGGGCC
AGGCAGCAAGTGACCCAAACGACGCTCACGCTGACCGCCATTGCCCTGCAGTGCGGTTTCAGTTCACCGGGGCAATTCAG
TACCCAATTTCGCCGCTATTTTGGCCTGACGCCGTCCGCCATGCGGCTGACTCTCGCGAGATAG

Upstream 100 bases:

>100_bases
ATTATCTCATCAGGGAATATGTGCATAATCACCGTATAACGTTGTTGAGTGAGCCCTGTTCATAATATGAAACAGGCTTT
CATTGATTAAAAGGTTAACC

Downstream 100 bases:

>100_bases
CGGCTTAGTCTTCGGCTGCCAGCGCCTGGGCACAGGCCCAGGCTGAGCTCCAGGCCCACTGGAAGTTATAGCCCCCCAGC
CACCCTGTCACATCCACCAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MGSDGLVYSDEKELQLSSCCWDYGRVDRVQVSGPHQARLVRPAHTLIVYDGYHSADGNTTINGDVWFDQKRTPATRVIGQ
VADIIPSGCDFDAISYAEGTLSYTAISISPRLIEQMPGGKAGLIIEPGANLRNPLLKQLCLGLQESDSELHASSLMMAML
AEAARYQHAATPDGLHRETLSRPVRERLASYIEDSLGENITLQAMAQIAELSIFHFSRAFRQHFGLPPYQYVLSRRLERA
RQQVTQTTLTLTAIALQCGFSSPGQFSTQFRRYFGLTPSAMRLTLAR

Sequences:

>Translated_287_residues
MGSDGLVYSDEKELQLSSCCWDYGRVDRVQVSGPHQARLVRPAHTLIVYDGYHSADGNTTINGDVWFDQKRTPATRVIGQ
VADIIPSGCDFDAISYAEGTLSYTAISISPRLIEQMPGGKAGLIIEPGANLRNPLLKQLCLGLQESDSELHASSLMMAML
AEAARYQHAATPDGLHRETLSRPVRERLASYIEDSLGENITLQAMAQIAELSIFHFSRAFRQHFGLPPYQYVLSRRLERA
RQQVTQTTLTLTAIALQCGFSSPGQFSTQFRRYFGLTPSAMRLTLAR
>Mature_286_residues
GSDGLVYSDEKELQLSSCCWDYGRVDRVQVSGPHQARLVRPAHTLIVYDGYHSADGNTTINGDVWFDQKRTPATRVIGQV
ADIIPSGCDFDAISYAEGTLSYTAISISPRLIEQMPGGKAGLIIEPGANLRNPLLKQLCLGLQESDSELHASSLMMAMLA
EAARYQHAATPDGLHRETLSRPVRERLASYIEDSLGENITLQAMAQIAELSIFHFSRAFRQHFGLPPYQYVLSRRLERAR
QQVTQTTLTLTAIALQCGFSSPGQFSTQFRRYFGLTPSAMRLTLAR

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=92, Percent_Identity=33.695652173913, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790339, Length=95, Percent_Identity=34.7368421052632, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31813; Mature: 31681

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSDGLVYSDEKELQLSSCCWDYGRVDRVQVSGPHQARLVRPAHTLIVYDGYHSADGNTT
CCCCCCEECCCHHHHHHHHHHCCCCCCEEEECCCCHHEEECCEEEEEEECCEECCCCCEE
INGDVWFDQKRTPATRVIGQVADIIPSGCDFDAISYAEGTLSYTAISISPRLIEQMPGGK
ECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEEECCHHHHHHCCCCC
AGLIIEPGANLRNPLLKQLCLGLQESDSELHASSLMMAMLAEAARYQHAATPDGLHRETL
EEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SRPVRERLASYIEDSLGENITLQAMAQIAELSIFHFSRAFRQHFGLPPYQYVLSRRLERA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RQQVTQTTLTLTAIALQCGFSSPGQFSTQFRRYFGLTPSAMRLTLAR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHEEEECC
>Mature Secondary Structure 
GSDGLVYSDEKELQLSSCCWDYGRVDRVQVSGPHQARLVRPAHTLIVYDGYHSADGNTT
CCCCCEECCCHHHHHHHHHHCCCCCCEEEECCCCHHEEECCEEEEEEECCEECCCCCEE
INGDVWFDQKRTPATRVIGQVADIIPSGCDFDAISYAEGTLSYTAISISPRLIEQMPGGK
ECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEEECCHHHHHHCCCCC
AGLIIEPGANLRNPLLKQLCLGLQESDSELHASSLMMAMLAEAARYQHAATPDGLHRETL
EEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SRPVRERLASYIEDSLGENITLQAMAQIAELSIFHFSRAFRQHFGLPPYQYVLSRRLERA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RQQVTQTTLTLTAIALQCGFSSPGQFSTQFRRYFGLTPSAMRLTLAR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA