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The map label for this gene is lysM [H]

Identifier: 157372913

GI number: 157372913

Start: 5172000

End: 5172422

Strand: Direct

Name: lysM [H]

Synonym: Spro_4681

Alternate gene names: 157372913

Gene position: 5172000-5172422 (Clockwise)

Preceding gene: 157372911

Following gene: 157372916

Centisome position: 94.92

GC content: 58.87

Gene sequence:

>423_bases
ATGAATGATACCGATCGCCAGATCCTCGCGCTGCTGCGCGAAAACGCCCGTACCTCCATCACCGAGATCGCCAGCAAGGT
GCGGGTTTCACGCGCTACTGTACAAAAAAGAATTGAGGCGCTGGAAGCACAGGGGATCATTACCGGCTATACCATCCGCA
TCAAACCGGGCGTGGAGCATAACCGCATCCGCGCCTGGATGTGTGTGGCGGTAGAAGGCACCAAGGCGCCCAGCGTGTTG
CAGCAACTGCGTGGCGAGCCTTCGGTCTTCACCCTGCACACCACCAACGGCAAGTGGGATATTCTGGTGGAGATCCGCAC
CGACAGCCTGGAGAGCTTCGATAAAATTTTGGGCCGCATCCGGCGTATTGCCGGCATTGCCGGCACCGAGACCAGCATCC
TGCTGTCGACGCACAAGGCTTAG

Upstream 100 bases:

>100_bases
CACCATTATGGATAATCAATTTGAAACCAGTCAGTGTGAAAAATGATTAAATTGCTCTATATTTTGACAAATCGCCACAA
ACTAGTGACATATTGACAAC

Downstream 100 bases:

>100_bases
GAGTTTATGGCTCGCGACGGCGGAACATGGCCTCCAGCATCTCCACAATCAGCGCCGCGTAGCGACCGTCGGGATCCAAA
TCAGGCGACAGAAAATATCG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNDTDRQILALLRENARTSITEIASKVRVSRATVQKRIEALEAQGIITGYTIRIKPGVEHNRIRAWMCVAVEGTKAPSVL
QQLRGEPSVFTLHTTNGKWDILVEIRTDSLESFDKILGRIRRIAGIAGTETSILLSTHKA

Sequences:

>Translated_140_residues
MNDTDRQILALLRENARTSITEIASKVRVSRATVQKRIEALEAQGIITGYTIRIKPGVEHNRIRAWMCVAVEGTKAPSVL
QQLRGEPSVFTLHTTNGKWDILVEIRTDSLESFDKILGRIRRIAGIAGTETSILLSTHKA
>Mature_140_residues
MNDTDRQILALLRENARTSITEIASKVRVSRATVQKRIEALEAQGIITGYTIRIKPGVEHNRIRAWMCVAVEGTKAPSVL
QQLRGEPSVFTLHTTNGKWDILVEIRTDSLESFDKILGRIRRIAGIAGTETSILLSTHKA

Specific function: In the absence or at low concentrations of lysine, activates the biosynthesis of this amino acid via the diaminopimelate pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=137, Percent_Identity=30.6569343065693, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15590; Mature: 15590

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTDRQILALLRENARTSITEIASKVRVSRATVQKRIEALEAQGIITGYTIRIKPGVEH
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCC
NRIRAWMCVAVEGTKAPSVLQQLRGEPSVFTLHTTNGKWDILVEIRTDSLESFDKILGRI
CCEEEEEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
RRIAGIAGTETSILLSTHKA
HHHHCCCCCCCEEEEEECCC
>Mature Secondary Structure
MNDTDRQILALLRENARTSITEIASKVRVSRATVQKRIEALEAQGIITGYTIRIKPGVEH
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCC
NRIRAWMCVAVEGTKAPSVLQQLRGEPSVFTLHTTNGKWDILVEIRTDSLESFDKILGRI
CCEEEEEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
RRIAGIAGTETSILLSTHKA
HHHHCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726; 12042311 [H]