| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yrfF [C]
Identifier: 157372845
GI number: 157372845
Start: 5088503
End: 5090635
Strand: Direct
Name: yrfF [C]
Synonym: Spro_4613
Alternate gene names: 157372845
Gene position: 5088503-5090635 (Clockwise)
Preceding gene: 157372843
Following gene: 157372846
Centisome position: 93.39
GC content: 57.85
Gene sequence:
>2133_bases ATGAGCACAATAGTGTTGATATTGGCCTTAGTGCTTGCCTGCCTGATTGCCGCCGGCCTGTATCTTTGGTTCAAAGCCCG CAATCAGCCGCTGCTGATGCGTACGCTGCCCTTTATCAAACCCACCCACCGCAAGCTGACCGGCGAAGAACGCGCCGCCG TTGAGCACTATCTTGGCCAACAAAACAAGCTGAGCAACAAACTGTTGCCCGGCAGCAACTCATTGCCTTCTGCCAAACTG GCGCTGACGCCGCAAAGCGACAACGTCTACCCGGTTACCCACGCCATTACCCGCTACGGTCTGGCCAGCGATGAACCCAA TAAATGGCGCTATTATCTGGACGCCGAAGAGGTGCATCTGCCGCCGTTCTGGGAGCAGTACATCAGCGCCGATAACCATG TGGAAGTGATTAGAACCCAGACGTTGCCGCTGGTGATCTCTCTCAACGGGCATTCGCTGAAAGACCATATTCACGATCGG CCGCTGCCGCCAGTGGTGAAGGCGACCCCGAGCCAAAATGCCTCTATCCGCAAGGAAGAGAGCGAGCATGTCGAACTGCT GAACATCCGCAAGGAAAGCCCGGAAGAACACGCACTCAATCGCCCGAACGGTATCAAAGAGGCCGCCATTATCTCGGCGG CTCTGCTGCTGCTGTTCTTCAGCCTGATAAGCCCGGTCGTGGTGATCCCCTGGATGATTGTCGTCGCCGTGTTGATGATC GCCTGGGGCTGCTGGAACCTGTTCCGCCGCCCTGCCACACGCGAACTAAAAGAAGTGCACTGCCTGCGGGGTACCCCCAA GCGCTGGGGGCTGTTTGGCGAATCCAACCAGGGGCAAATCAGCAATATTTCACTCGGCATCATTGACCTGATTTATCCGC CGCACTGGCAGCCATACATCGCTCAGGATCTGGGTAAAACCACCGACGTGGATATCTACCTTAACCGCCAGGTGCTGCGC CAGGGTCGCTACCTTTCGCTGCATGATGAGGTGAAAAACTTCCCGCTGCAGCAATGGGGCAGGAACGCGGTTCTCATGGC CAGTTCACTTTTGGTACTGCTGCTGTTGCTGACCTATATCCCGCTCAGCCTGCCGCTCAAGCTGAGCATGGCCTGGCTAC AGGGCGCGCAAAAAATTGAAGTGACCAACGTACAGGCACTGGAAGGCGCAACGTTACGCATCGGGGATACCCTGAAAGCC CAGGGCACGGGCATGTGCTACGTACCACCGTTAACCAGTGGCACGCGCTCCGCCAGCTTTATGCCGTTCGACTGTTCCGG AATTTACTGGAACAACGCGGCGCCTCTGCCGCAGCCGGAGTCGGAAGTGATCGACAAGGCCTCAGCCCTGCTGGCGACGG TCAACACCCAGTTGCACCCTGACGGCTCCGACCAAAAGCTCAACCCACAGTTGGCCAGCGCAATCGAAAAATCCGGCATG ATCCTGCTGGATGATTTTTCCGATATCGTGCTGAAAACGCAGGATCTGTGCCAAGCGGATAATGACTGCGTCCGGCTGAA GAACGCACTGGTCAATCTGGGCAACGTCAAAAATTGGGGCACCCTGGTGAAACGTGCCAAATCAGGCTCGCTGCAAGGGG TGAACGTGTTGCTGCGCCCGGTGAGCGCCGAATCGCTGGAGAGCCTGACCAAAGTGGCCGCATCATCCTTCGTCTACAGC GAAACCAGGCAGGCCGCCGCCGCGCTCAACAGCCCGCCACCGGGGGGGTTCCTGATCACCAGTGATGAAGGCAAACAGCT GGTGAATCATCCGCAGCCGACGGTGCCGCTAAACGAATACAACGCACTTGACCAGTGGAATGAGCTACAACGCCTTGCCG GCATGCTGCTGCATACGCCGTTCGAGGCCCAGGGCGTGATCACCAATATCAGCGTCGATGCCAACGGTACCCGTCATATT GCACTGCACAGCGAACCGGATATCATCACCCTGTGGCGCTATCTCGGCACCAGCCTGCTGCTGCTGAGCGTCGCCGTCGT GCTGGGCTACAACAGCTGGAAACTGGTGCAGCGCCGTTGCATCAATCAGCACCGCATCGCTGATATCCAGCGCTACTACG AAAGCTGCTTTAACCCGCAGCTCGCCCCGATGTCATTGCGCCCGATGCCCTGA
Upstream 100 bases:
>100_bases CTCTCGTTACGGATCAGGGTGTCTCTTGGTGATTTGGCTGCGTATAATAGTCCAGGATTCATCAGGTTGGTGAGGTTCAC GGGTACAGGATGGGGATAGC
Downstream 100 bases:
>100_bases GCCACTAGCCCCGGCCTGCGCCCTGTCATCAGCTTATGCTACGCTAACGCTATTCCCCTTATCCTGCGGACCGCCGAAGG TTCGCCTATGGAGTTTTCAT
Product: intracellular growth attenuator IgaA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 710; Mature: 709
Protein sequence:
>710_residues MSTIVLILALVLACLIAAGLYLWFKARNQPLLMRTLPFIKPTHRKLTGEERAAVEHYLGQQNKLSNKLLPGSNSLPSAKL ALTPQSDNVYPVTHAITRYGLASDEPNKWRYYLDAEEVHLPPFWEQYISADNHVEVIRTQTLPLVISLNGHSLKDHIHDR PLPPVVKATPSQNASIRKEESEHVELLNIRKESPEEHALNRPNGIKEAAIISAALLLLFFSLISPVVVIPWMIVVAVLMI AWGCWNLFRRPATRELKEVHCLRGTPKRWGLFGESNQGQISNISLGIIDLIYPPHWQPYIAQDLGKTTDVDIYLNRQVLR QGRYLSLHDEVKNFPLQQWGRNAVLMASSLLVLLLLLTYIPLSLPLKLSMAWLQGAQKIEVTNVQALEGATLRIGDTLKA QGTGMCYVPPLTSGTRSASFMPFDCSGIYWNNAAPLPQPESEVIDKASALLATVNTQLHPDGSDQKLNPQLASAIEKSGM ILLDDFSDIVLKTQDLCQADNDCVRLKNALVNLGNVKNWGTLVKRAKSGSLQGVNVLLRPVSAESLESLTKVAASSFVYS ETRQAAAALNSPPPGGFLITSDEGKQLVNHPQPTVPLNEYNALDQWNELQRLAGMLLHTPFEAQGVITNISVDANGTRHI ALHSEPDIITLWRYLGTSLLLLSVAVVLGYNSWKLVQRRCINQHRIADIQRYYESCFNPQLAPMSLRPMP
Sequences:
>Translated_710_residues MSTIVLILALVLACLIAAGLYLWFKARNQPLLMRTLPFIKPTHRKLTGEERAAVEHYLGQQNKLSNKLLPGSNSLPSAKL ALTPQSDNVYPVTHAITRYGLASDEPNKWRYYLDAEEVHLPPFWEQYISADNHVEVIRTQTLPLVISLNGHSLKDHIHDR PLPPVVKATPSQNASIRKEESEHVELLNIRKESPEEHALNRPNGIKEAAIISAALLLLFFSLISPVVVIPWMIVVAVLMI AWGCWNLFRRPATRELKEVHCLRGTPKRWGLFGESNQGQISNISLGIIDLIYPPHWQPYIAQDLGKTTDVDIYLNRQVLR QGRYLSLHDEVKNFPLQQWGRNAVLMASSLLVLLLLLTYIPLSLPLKLSMAWLQGAQKIEVTNVQALEGATLRIGDTLKA QGTGMCYVPPLTSGTRSASFMPFDCSGIYWNNAAPLPQPESEVIDKASALLATVNTQLHPDGSDQKLNPQLASAIEKSGM ILLDDFSDIVLKTQDLCQADNDCVRLKNALVNLGNVKNWGTLVKRAKSGSLQGVNVLLRPVSAESLESLTKVAASSFVYS ETRQAAAALNSPPPGGFLITSDEGKQLVNHPQPTVPLNEYNALDQWNELQRLAGMLLHTPFEAQGVITNISVDANGTRHI ALHSEPDIITLWRYLGTSLLLLSVAVVLGYNSWKLVQRRCINQHRIADIQRYYESCFNPQLAPMSLRPMP >Mature_709_residues STIVLILALVLACLIAAGLYLWFKARNQPLLMRTLPFIKPTHRKLTGEERAAVEHYLGQQNKLSNKLLPGSNSLPSAKLA LTPQSDNVYPVTHAITRYGLASDEPNKWRYYLDAEEVHLPPFWEQYISADNHVEVIRTQTLPLVISLNGHSLKDHIHDRP LPPVVKATPSQNASIRKEESEHVELLNIRKESPEEHALNRPNGIKEAAIISAALLLLFFSLISPVVVIPWMIVVAVLMIA WGCWNLFRRPATRELKEVHCLRGTPKRWGLFGESNQGQISNISLGIIDLIYPPHWQPYIAQDLGKTTDVDIYLNRQVLRQ GRYLSLHDEVKNFPLQQWGRNAVLMASSLLVLLLLLTYIPLSLPLKLSMAWLQGAQKIEVTNVQALEGATLRIGDTLKAQ GTGMCYVPPLTSGTRSASFMPFDCSGIYWNNAAPLPQPESEVIDKASALLATVNTQLHPDGSDQKLNPQLASAIEKSGMI LLDDFSDIVLKTQDLCQADNDCVRLKNALVNLGNVKNWGTLVKRAKSGSLQGVNVLLRPVSAESLESLTKVAASSFVYSE TRQAAAALNSPPPGGFLITSDEGKQLVNHPQPTVPLNEYNALDQWNELQRLAGMLLHTPFEAQGVITNISVDANGTRHIA LHSEPDIITLWRYLGTSLLLLSVAVVLGYNSWKLVQRRCINQHRIADIQRYYESCFNPQLAPMSLRPMP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the igaA family [H]
Homologues:
Organism=Escherichia coli, GI1789801, Length=712, Percent_Identity=57.0224719101124, Blast_Score=760, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010771 - ProDom: PD147088 [H]
Pfam domain/function: PF07095 IgaA [H]
EC number: NA
Molecular weight: Translated: 78964; Mature: 78833
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIVLILALVLACLIAAGLYLWFKARNQPLLMRTLPFIKPTHRKLTGEERAAVEHYLGQ CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCHHHCCCHHHHHHHHHHCC QNKLSNKLLPGSNSLPSAKLALTPQSDNVYPVTHAITRYGLASDEPNKWRYYLDAEEVHL CHHHCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCCCCCC PPFWEQYISADNHVEVIRTQTLPLVISLNGHSLKDHIHDRPLPPVVKATPSQNASIRKEE CHHHHHHCCCCCCEEEEEECCEEEEEEECCCCHHHHHCCCCCCCCEECCCCCCCCCCCCC SEHVELLNIRKESPEEHALNRPNGIKEAAIISAALLLLFFSLISPVVVIPWMIVVAVLMI HHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWGCWNLFRRPATRELKEVHCLRGTPKRWGLFGESNQGQISNISLGIIDLIYPPHWQPYI HHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHH AQDLGKTTDVDIYLNRQVLRQGRYLSLHDEVKNFPLQQWGRNAVLMASSLLVLLLLLTYI HHHCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHC PLSLPLKLSMAWLQGAQKIEVTNVQALEGATLRIGDTLKAQGTGMCYVPPLTSGTRSASF CCCCCHHHHHHHHCCCCEEEEECEEEECCCEEEECCCEECCCCCEEEECCCCCCCCCCCC MPFDCSGIYWNNAAPLPQPESEVIDKASALLATVNTQLHPDGSDQKLNPQLASAIEKSGM CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHCCC ILLDDFSDIVLKTQDLCQADNDCVRLKNALVNLGNVKNWGTLVKRAKSGSLQGVNVLLRP EEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEC VSAESLESLTKVAASSFVYSETRQAAAALNSPPPGGFLITSDEGKQLVNHPQPTVPLNEY CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCCCCCCCCCC NALDQWNELQRLAGMLLHTPFEAQGVITNISVDANGTRHIALHSEPDIITLWRYLGTSLL CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH LLSVAVVLGYNSWKLVQRRCINQHRIADIQRYYESCFNPQLAPMSLRPMP HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure STIVLILALVLACLIAAGLYLWFKARNQPLLMRTLPFIKPTHRKLTGEERAAVEHYLGQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCHHHCCCHHHHHHHHHHCC QNKLSNKLLPGSNSLPSAKLALTPQSDNVYPVTHAITRYGLASDEPNKWRYYLDAEEVHL CHHHCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCCCCCC PPFWEQYISADNHVEVIRTQTLPLVISLNGHSLKDHIHDRPLPPVVKATPSQNASIRKEE CHHHHHHCCCCCCEEEEEECCEEEEEEECCCCHHHHHCCCCCCCCEECCCCCCCCCCCCC SEHVELLNIRKESPEEHALNRPNGIKEAAIISAALLLLFFSLISPVVVIPWMIVVAVLMI HHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWGCWNLFRRPATRELKEVHCLRGTPKRWGLFGESNQGQISNISLGIIDLIYPPHWQPYI HHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHH AQDLGKTTDVDIYLNRQVLRQGRYLSLHDEVKNFPLQQWGRNAVLMASSLLVLLLLLTYI HHHCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHC PLSLPLKLSMAWLQGAQKIEVTNVQALEGATLRIGDTLKAQGTGMCYVPPLTSGTRSASF CCCCCHHHHHHHHCCCCEEEEECEEEECCCEEEECCCEECCCCCEEEECCCCCCCCCCCC MPFDCSGIYWNNAAPLPQPESEVIDKASALLATVNTQLHPDGSDQKLNPQLASAIEKSGM CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHCCC ILLDDFSDIVLKTQDLCQADNDCVRLKNALVNLGNVKNWGTLVKRAKSGSLQGVNVLLRP EEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEC VSAESLESLTKVAASSFVYSETRQAAAALNSPPPGGFLITSDEGKQLVNHPQPTVPLNEY CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCCCCCCCCCC NALDQWNELQRLAGMLLHTPFEAQGVITNISVDANGTRHIALHSEPDIITLWRYLGTSLL CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH LLSVAVVLGYNSWKLVQRRCINQHRIADIQRYYESCFNPQLAPMSLRPMP HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]