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The map label for this gene is yocS [H]

Identifier: 157372713

GI number: 157372713

Start: 4957533

End: 4958450

Strand: Direct

Name: yocS [H]

Synonym: Spro_4480

Alternate gene names: 157372713

Gene position: 4957533-4958450 (Clockwise)

Preceding gene: 157372712

Following gene: 157372714

Centisome position: 90.98

GC content: 60.35

Gene sequence:

>918_bases
ATGCTGGCAAAATTGACCCGATTATTCCCCCTGTGGGCGGTGCTGCTCGCCGTCGCCGCCTACTTCACGCCCACCAGCTT
TACCGGTATCGGCCCCTACGTCAGCCCGCTGTTGATGTTGATCATGTTCGCCATGGGCGTCACGCTGCGGCTGGATGACT
TCAGGCGCGTGCTGTCCCGGCCTGGCCCGGTAGCCGCCGGGATCTTTTTGCATTACCTGATCATGCCGCTGGCGGCCTGG
CTGCTGGCGATGCTGTTCCACATGCCGCCGGATCTTTCCGCCGGTATGGTGCTGGTCGGCAGCGTGGCCAGCGGCACGGC
TTCCAACGTCATGATCTATCTGGCAAAGGGCGACGTGGCACTGTCAGTGACCATCTCGGCAGTTTCCACACTAGTGGGCG
TGTTCGCCACGCCGCTGCTGACCCGCTTATACGTTGATACCGAGATCAGCGTCGATGTGATGGGCATGCTGCTGAGCATT
CTGCAGATCGTGGTGATCCCGATTGGTCTGGGGTTGATCGTCCATCACACCTTTACCAAAGCCGTTAAACGCATTGAGCC
TATTCTGCCGGCGCTGTCGATGGTGTGTATTTTGGCGATCATCAGTGCCGTAGTGGCAGGCAGCCAAAGCCATATCGCCT
CGGTCGGGCTGGTGGTGATCATCGCGGTGATCCTGCATAACGCCATCGGGCTGCTGAGCGGTTACTGGGGCGGCAAGCTG
TTTGGCTTTGACGAGTCCACCTGCCGTACGCTGGCGATTGAAGTCGGCATGCAGAACTCCGGGCTGGCGGCAACGCTGGG
CAAAATCTACTTCTCACCGCTGGCCGCGCTGCCGGGTGCGCTGTTCTCGGTGTGGCATAACCTGTCCGGTTCACTGCTGG
CGGGTTACTGGTCCGGTCGGCCGACCGACAAAAAGTAA

Upstream 100 bases:

>100_bases
CTAAAAAATCAGTTCATAACCGTAGGGGTTCAGTCCGCTGAACTCGCAAAAAAACACAACTCCATCCCATCGTTCTATTT
GGCTAAGGAAAACCTCATTC

Downstream 100 bases:

>100_bases
TTTCACTCTGGGGCGCAAAATAACTGCGCCCCACCCCTTCTGCGAAATTTCGTATTTCCCACTGGTCGGATTGTCAGAAT
TACCCCCAGCCTCTATTATC

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLAKLTRLFPLWAVLLAVAAYFTPTSFTGIGPYVSPLLMLIMFAMGVTLRLDDFRRVLSRPGPVAAGIFLHYLIMPLAAW
LLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDTEISVDVMGMLLSI
LQIVVIPIGLGLIVHHTFTKAVKRIEPILPALSMVCILAIISAVVAGSQSHIASVGLVVIIAVILHNAIGLLSGYWGGKL
FGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGRPTDKK

Sequences:

>Translated_305_residues
MLAKLTRLFPLWAVLLAVAAYFTPTSFTGIGPYVSPLLMLIMFAMGVTLRLDDFRRVLSRPGPVAAGIFLHYLIMPLAAW
LLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDTEISVDVMGMLLSI
LQIVVIPIGLGLIVHHTFTKAVKRIEPILPALSMVCILAIISAVVAGSQSHIASVGLVVIIAVILHNAIGLLSGYWGGKL
FGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGRPTDKK
>Mature_305_residues
MLAKLTRLFPLWAVLLAVAAYFTPTSFTGIGPYVSPLLMLIMFAMGVTLRLDDFRRVLSRPGPVAAGIFLHYLIMPLAAW
LLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDTEISVDVMGMLLSI
LQIVVIPIGLGLIVHHTFTKAVKRIEPILPALSMVCILAIISAVVAGSQSHIASVGLVVIIAVILHNAIGLLSGYWGGKL
FGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGRPTDKK

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=249, Percent_Identity=32.1285140562249, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI4506971, Length=245, Percent_Identity=26.1224489795918, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI58219066, Length=238, Percent_Identity=26.0504201680672, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI37537552, Length=247, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI215422368, Length=238, Percent_Identity=25.6302521008403, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI215422370, Length=238, Percent_Identity=25.6302521008403, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI9790143, Length=238, Percent_Identity=25.6302521008403, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32305; Mature: 32305

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKLTRLFPLWAVLLAVAAYFTPTSFTGIGPYVSPLLMLIMFAMGVTLRLDDFRRVLSR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHCC
PGPVAAGIFLHYLIMPLAAWLLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEECCEE
LSVTISAVSTLVGVFATPLLTRLYVDTEISVDVMGMLLSILQIVVIPIGLGLIVHHTFTK
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVKRIEPILPALSMVCILAIISAVVAGSQSHIASVGLVVIIAVILHNAIGLLSGYWGGKL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGR
ECCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PTDKK
CCCCC
>Mature Secondary Structure
MLAKLTRLFPLWAVLLAVAAYFTPTSFTGIGPYVSPLLMLIMFAMGVTLRLDDFRRVLSR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHCC
PGPVAAGIFLHYLIMPLAAWLLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEECCEE
LSVTISAVSTLVGVFATPLLTRLYVDTEISVDVMGMLLSILQIVVIPIGLGLIVHHTFTK
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVKRIEPILPALSMVCILAIISAVVAGSQSHIASVGLVVIIAVILHNAIGLLSGYWGGKL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGR
ECCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PTDKK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]