Click here to switch to the map view.

The map label for this gene is yhdH [H]

Identifier: 157372646

GI number: 157372646

Start: 4887516

End: 4888493

Strand: Direct

Name: yhdH [H]

Synonym: Spro_4413

Alternate gene names: 157372646

Gene position: 4887516-4888493 (Clockwise)

Preceding gene: 157372629

Following gene: 157372647

Centisome position: 89.7

GC content: 59.51

Gene sequence:

>978_bases
ATGCGTGCACTGTTATTGGAACAACAAGACGATCAAACTCTGGCTCGCGTCAAAGATATCAACAGTGACCAACTGCCCGA
CGGCGATGTCACGGTAGACGTTAATTGGTCCAGCATTAACTATAAAGACGCGTTGGCGATCACCGGCAAAGGCAAAATCG
TGCGTAACTTCCCGATGGTGCCAGGCATCGACTTCGCCGGTACCGTGCGCCAAAGCCGCGACGATCGTTTTAAAGAAGGC
CAAAGCGTGGTGCTTACCGGCTGGGGCGTGGGTGAAAACCACTGGGGCGGCCTGGCCGAGCAGGCGCGTGTCTCCGGGGA
ATGGTTGGTGCCGTTGCCAAACGGATTGGATGAACGTAAAGCGATGATCCTCGGTACCGCCGGCTTTACCGCCATGCTGT
GCGTGATGGCGCTGGAAGAAGGCGGCGTACATCCGGATGACGGCGACATTTTGGTTACGGGTGCCAGCGGTGGCGTAGGC
AGCACGGCGGTCGCTATTCTGGCGGCGCTGGGTTATCACGTCACGGCCATCAGCGGCCGTGAAAGCAATACCGACTACCT
CAAAGCGCTCGGCGCCAAAGAAGTCCTGTCGCGTGACGGCTATCTCGAAGCTCCGCGCCCACTGGAAAAGCAACTGTGGG
CCGGTGCGGTGGATACCGTCGGCGACACTATGCTGGCGCGGGTTTTGGCGCAAATGAACTATAACGGCACGGTCGCCGCC
TGTGGCCTGGCCGGTGGTTATCACCTGCCGACCACGGTGATGCCATTTATTTTGCGCAATGTTCGTTTGCAAGGGGTCGA
CTCGGTGCACACCCCGTTGCATCGCCGTCAAACCGCCTGGGAGCGCCTGGCCGGTATCCTGCCGGACAGCTTCTACCAGC
AAGCCACCCAGGAAATCACGCTGGAGCAGGCACCGGCCACGGCTGCCGCACTGTTGGACAACAAAGTTACCGGCCGCACC
CTGGTAAAAATCCGCTGA

Upstream 100 bases:

>100_bases
TTTTTGTCTTTTATCAGGACATAAATTTCTTATATGCATATAGTCAATTAAATCGGATCCAGCCATCCATGACAAAATTG
CAAACAAGAGGAAGAGTGAC

Downstream 100 bases:

>100_bases
GTCTGACGGCCCCCCGCAACGGGGGCCTATCCCGTCTGCGAAATTTCATATTTTCCCTCCGCCTCTCGCATAAGGCCTGG
TTTCACGCCATGCTTACACC

Product: quinone oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MRALLLEQQDDQTLARVKDINSDQLPDGDVTVDVNWSSINYKDALAITGKGKIVRNFPMVPGIDFAGTVRQSRDDRFKEG
QSVVLTGWGVGENHWGGLAEQARVSGEWLVPLPNGLDERKAMILGTAGFTAMLCVMALEEGGVHPDDGDILVTGASGGVG
STAVAILAALGYHVTAISGRESNTDYLKALGAKEVLSRDGYLEAPRPLEKQLWAGAVDTVGDTMLARVLAQMNYNGTVAA
CGLAGGYHLPTTVMPFILRNVRLQGVDSVHTPLHRRQTAWERLAGILPDSFYQQATQEITLEQAPATAAALLDNKVTGRT
LVKIR

Sequences:

>Translated_325_residues
MRALLLEQQDDQTLARVKDINSDQLPDGDVTVDVNWSSINYKDALAITGKGKIVRNFPMVPGIDFAGTVRQSRDDRFKEG
QSVVLTGWGVGENHWGGLAEQARVSGEWLVPLPNGLDERKAMILGTAGFTAMLCVMALEEGGVHPDDGDILVTGASGGVG
STAVAILAALGYHVTAISGRESNTDYLKALGAKEVLSRDGYLEAPRPLEKQLWAGAVDTVGDTMLARVLAQMNYNGTVAA
CGLAGGYHLPTTVMPFILRNVRLQGVDSVHTPLHRRQTAWERLAGILPDSFYQQATQEITLEQAPATAAALLDNKVTGRT
LVKIR
>Mature_325_residues
MRALLLEQQDDQTLARVKDINSDQLPDGDVTVDVNWSSINYKDALAITGKGKIVRNFPMVPGIDFAGTVRQSRDDRFKEG
QSVVLTGWGVGENHWGGLAEQARVSGEWLVPLPNGLDERKAMILGTAGFTAMLCVMALEEGGVHPDDGDILVTGASGGVG
STAVAILAALGYHVTAISGRESNTDYLKALGAKEVLSRDGYLEAPRPLEKQLWAGAVDTVGDTMLARVLAQMNYNGTVAA
CGLAGGYHLPTTVMPFILRNVRLQGVDSVHTPLHRRQTAWERLAGILPDSFYQQATQEITLEQAPATAAALLDNKVTGRT
LVKIR

Specific function: Unknown

COG id: COG0604

COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789651, Length=324, Percent_Identity=72.5308641975309, Blast_Score=490, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR013154
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040
- InterPro:   IPR014188 [H]

Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]

EC number: NA

Molecular weight: Translated: 34887; Mature: 34887

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALLLEQQDDQTLARVKDINSDQLPDGDVTVDVNWSSINYKDALAITGKGKIVRNFPMV
CCCEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEEECEECCCCEEEEECCCCEEEECCCC
PGIDFAGTVRQSRDDRFKEGQSVVLTGWGVGENHWGGLAEQARVSGEWLVPLPNGLDERK
CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCC
AMILGTAGFTAMLCVMALEEGGVHPDDGDILVTGASGGVGSTAVAILAALGYHVTAISGR
EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHEEEECCC
ESNTDYLKALGAKEVLSRDGYLEAPRPLEKQLWAGAVDTVGDTMLARVLAQMNYNGTVAA
CCCHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEE
CGLAGGYHLPTTVMPFILRNVRLQGVDSVHTPLHRRQTAWERLAGILPDSFYQQATQEIT
EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEQAPATAAALLDNKVTGRTLVKIR
HHCCCCHHHHHHCCCCCCCEEEEEC
>Mature Secondary Structure
MRALLLEQQDDQTLARVKDINSDQLPDGDVTVDVNWSSINYKDALAITGKGKIVRNFPMV
CCCEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEEECEECCCCEEEEECCCCEEEECCCC
PGIDFAGTVRQSRDDRFKEGQSVVLTGWGVGENHWGGLAEQARVSGEWLVPLPNGLDERK
CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCC
AMILGTAGFTAMLCVMALEEGGVHPDDGDILVTGASGGVGSTAVAILAALGYHVTAISGR
EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHEEEECCC
ESNTDYLKALGAKEVLSRDGYLEAPRPLEKQLWAGAVDTVGDTMLARVLAQMNYNGTVAA
CCCHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEE
CGLAGGYHLPTTVMPFILRNVRLQGVDSVHTPLHRRQTAWERLAGILPDSFYQQATQEIT
EECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEQAPATAAALLDNKVTGRTLVKIR
HHCCCCHHHHHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1370469; 9278503 [H]