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The map label for this gene is yedY

Identifier: 157372647

GI number: 157372647

Start: 4888615

End: 4889616

Strand: Direct

Name: yedY

Synonym: Spro_4414

Alternate gene names: 157372647

Gene position: 4888615-4889616 (Clockwise)

Preceding gene: 157372646

Following gene: 157372648

Centisome position: 89.72

GC content: 56.79

Gene sequence:

>1002_bases
ATGAGCAAACAACGAAAACTCACTGAGGCCGATGTCACGCCAGAGAGCGTATTTTATCAGCGCCGTAAAGTGTTGCAGGC
GTTGGGCATTACCGCCGCATCACTGGCCCTGCCGCATAATGCGCAGGCCGATTTGCTGTCATGGTTTAAGGGTAACGATC
GGCCCAAGGCACCGCCGGGTAAACCGCTGGAGTTCAGCAAACCTGCCGCCTGGCAGGCCCAGTTGGATTTGACGCCCGAA
GATAAAGTCACCGGCTATAACAACTTCTACGAATTCGGTCTGGACAAGGCCGATCCGGCAGCCAATGCCGGCGGCTTGAA
AACCGAAGGCTGGCAGGTACGCATCGACGGTGAAGTCGCCAAACCCATCACGCTGGACATAGATGATTTAATCAAACGCT
TCCCGCTGGAACAGCGCATCTATCGCATGCGCTGCGTTGAAGCCTGGTCAATGGTGGTGCCGTGGATTGGCTTTGAATTG
GGTAAACTGATCAAATTCGCGGAACCCAACAGCAACGCACGCTACGTCGCTTTCCAGACGTTGTACGACCCGGAACAGAT
GCCCGGCCAGAAAGACCGCTTTATCGGCGGCGGGTTGAAGTATCCCTATGTCGAAGGGCTGCGTCTCGACGAGGCGATGA
ACCCGCTGGCACTGCTGACCGTCGGCGTGTACGGCAAAACGCTGCCGCCGCAAAATGGCGCGCCGCTGCGCTTGATCACC
CCATGGAAATACGGTTTTAAGGGGATAAAGTCGATCGTCCATATCCGCCTGGTGCGCGATCAGCCGCCGACCACCTGGAA
TCAGTCGGCGCCGAATGAATACGGCTTCTACGCCAACGTGAATCCGCACGTCGATCATCCCCGTTGGTCGCAGGCCACCG
AGCGTTTTATCGGTTCCGGCGGCATTCTGGACGTTAAACGCCAACCCACCCTGCTGTTTAATGGCTATGCGGAACAGGTC
GCATCGCTGTACCGTGGCCTGGATCTACGGGAGAATTTCTAA

Upstream 100 bases:

>100_bases
GGGGCCTATCCCGTCTGCGAAATTTCATATTTTCCCTCCGCCTCTCGCATAAGGCCTGGTTTCACGCCATGCTTACACCA
TAAATTGCGGAGAAAATACC

Downstream 100 bases:

>100_bases
GTGCGTTTGACTCCAACCCATATCAAAGGGATCAAGGTTGCCATTTATCTGGCGGCATTTTTGCCCTTTCTCTGGCTGGT
GCTGTCGGTGGATCAGGGCT

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSKQRKLTEADVTPESVFYQRRKVLQALGITAASLALPHNAQADLLSWFKGNDRPKAPPGKPLEFSKPAAWQAQLDLTPE
DKVTGYNNFYEFGLDKADPAANAGGLKTEGWQVRIDGEVAKPITLDIDDLIKRFPLEQRIYRMRCVEAWSMVVPWIGFEL
GKLIKFAEPNSNARYVAFQTLYDPEQMPGQKDRFIGGGLKYPYVEGLRLDEAMNPLALLTVGVYGKTLPPQNGAPLRLIT
PWKYGFKGIKSIVHIRLVRDQPPTTWNQSAPNEYGFYANVNPHVDHPRWSQATERFIGSGGILDVKRQPTLLFNGYAEQV
ASLYRGLDLRENF

Sequences:

>Translated_333_residues
MSKQRKLTEADVTPESVFYQRRKVLQALGITAASLALPHNAQADLLSWFKGNDRPKAPPGKPLEFSKPAAWQAQLDLTPE
DKVTGYNNFYEFGLDKADPAANAGGLKTEGWQVRIDGEVAKPITLDIDDLIKRFPLEQRIYRMRCVEAWSMVVPWIGFEL
GKLIKFAEPNSNARYVAFQTLYDPEQMPGQKDRFIGGGLKYPYVEGLRLDEAMNPLALLTVGVYGKTLPPQNGAPLRLIT
PWKYGFKGIKSIVHIRLVRDQPPTTWNQSAPNEYGFYANVNPHVDHPRWSQATERFIGSGGILDVKRQPTLLFNGYAEQV
ASLYRGLDLRENF
>Mature_332_residues
SKQRKLTEADVTPESVFYQRRKVLQALGITAASLALPHNAQADLLSWFKGNDRPKAPPGKPLEFSKPAAWQAQLDLTPED
KVTGYNNFYEFGLDKADPAANAGGLKTEGWQVRIDGEVAKPITLDIDDLIKRFPLEQRIYRMRCVEAWSMVVPWIGFELG
KLIKFAEPNSNARYVAFQTLYDPEQMPGQKDRFIGGGLKYPYVEGLRLDEAMNPLALLTVGVYGKTLPPQNGAPLRLITP
WKYGFKGIKSIVHIRLVRDQPPTTWNQSAPNEYGFYANVNPHVDHPRWSQATERFIGSGGILDVKRQPTLLFNGYAEQVA
SLYRGLDLRENF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family

Homologues:

Organism=Escherichia coli, GI1788282, Length=334, Percent_Identity=80.2395209580838, Blast_Score=562, Evalue=1e-162,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEDY_SERP5 (A8GK68)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001480636.1
- ProteinModelPortal:   A8GK68
- SMR:   A8GK68
- STRING:   A8GK68
- GeneID:   5605893
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_4414
- eggNOG:   COG2041
- HOGENOM:   HBG287041
- OMA:   HYNNFYE
- ProtClustDB:   PRK05363
- BioCyc:   SPRO399741:SPRO_4414-MONOMER
- HAMAP:   MF_01206
- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867
- Gene3D:   G3DSA:3.90.420.10
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF00174 Oxidored_molyb; SSF56524 Oxidored_molyb

EC number: NA

Molecular weight: Translated: 37551; Mature: 37420

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS51318 TAT

Important sites: BINDING 87-87 BINDING 180-180 BINDING 232-232 BINDING 237-237

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQRKLTEADVTPESVFYQRRKVLQALGITAASLALPHNAQADLLSWFKGNDRPKAPPG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC
KPLEFSKPAAWQAQLDLTPEDKVTGYNNFYEFGLDKADPAANAGGLKTEGWQVRIDGEVA
CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC
KPITLDIDDLIKRFPLEQRIYRMRCVEAWSMVVPWIGFELGKLIKFAEPNSNARYVAFQT
CCEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEE
LYDPEQMPGQKDRFIGGGLKYPYVEGLRLDEAMNPLALLTVGVYGKTLPPQNGAPLRLIT
ECCHHHCCCCCCCCCCCCCCCCHHCCEEHHHHCCCCEEEEEHHCCCCCCCCCCCCEEEEC
PWKYGFKGIKSIVHIRLVRDQPPTTWNQSAPNEYGFYANVNPHVDHPRWSQATERFIGSG
CHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCC
GILDVKRQPTLLFNGYAEQVASLYRGLDLRENF
CEEEECCCCEEEECCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKQRKLTEADVTPESVFYQRRKVLQALGITAASLALPHNAQADLLSWFKGNDRPKAPPG
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC
KPLEFSKPAAWQAQLDLTPEDKVTGYNNFYEFGLDKADPAANAGGLKTEGWQVRIDGEVA
CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC
KPITLDIDDLIKRFPLEQRIYRMRCVEAWSMVVPWIGFELGKLIKFAEPNSNARYVAFQT
CCEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEE
LYDPEQMPGQKDRFIGGGLKYPYVEGLRLDEAMNPLALLTVGVYGKTLPPQNGAPLRLIT
ECCHHHCCCCCCCCCCCCCCCCHHCCEEHHHHCCCCEEEEEHHCCCCCCCCCCCCEEEEC
PWKYGFKGIKSIVHIRLVRDQPPTTWNQSAPNEYGFYANVNPHVDHPRWSQATERFIGSG
CHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCC
GILDVKRQPTLLFNGYAEQVASLYRGLDLRENF
CEEEECCCCEEEECCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA