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The map label for this gene is ygdI [H]

Identifier: 157372041

GI number: 157372041

Start: 4206415

End: 4206639

Strand: Reverse

Name: ygdI [H]

Synonym: Spro_3806

Alternate gene names: 157372041

Gene position: 4206639-4206415 (Counterclockwise)

Preceding gene: 157372044

Following gene: 157372040

Centisome position: 77.2

GC content: 49.33

Gene sequence:

>225_bases
ATGAAGAAAACAGCCGCAGTTATCTCTGCCCTGATGCTAACGTTTACCCTGGCCGCCTGTTCCAGCAACTACGTGATGCA
GACCAATGATGGACGCACCATTGTCGCTAAAGGAAAACCCGCGTTGGATAACGACACCGGGATGATCAGCTATAAAGACG
CCAACGGCGTTGAGCAGCAGATCAACCGTTCAGACGTGAAGGAAATGGTTGAAAAAGACCAATAA

Upstream 100 bases:

>100_bases
AATTATAGGTAAGTTTGTTATGCTGTTAGGTGCGCACTAAGTCATGGCGTTAAATAACATAAAAGGTTTTTACAGCATTT
AAAACTACAAGGAGTCCACA

Downstream 100 bases:

>100_bases
CGTCGGGCAAAAAAAAAGCACCGCAAAGATTGCGGTGCTGCATAAAATCACTATGGACAGACAGGGTAAATGTACAGGAA
GTGAAAAACAGTAGCTTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MKKTAAVISALMLTFTLAACSSNYVMQTNDGRTIVAKGKPALDNDTGMISYKDANGVEQQINRSDVKEMVEKDQ

Sequences:

>Translated_74_residues
MKKTAAVISALMLTFTLAACSSNYVMQTNDGRTIVAKGKPALDNDTGMISYKDANGVEQQINRSDVKEMVEKDQ
>Mature_74_residues
MKKTAAVISALMLTFTLAACSSNYVMQTNDGRTIVAKGKPALDNDTGMISYKDANGVEQQINRSDVKEMVEKDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdR [H]

Homologues:

Organism=Escherichia coli, GI87082162, Length=75, Percent_Identity=81.3333333333333, Blast_Score=124, Evalue=2e-30,
Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=52.7777777777778, Blast_Score=88, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 8057; Mature: 8057

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTAAVISALMLTFTLAACSSNYVMQTNDGRTIVAKGKPALDNDTGMISYKDANGVEQQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCHHHH
INRSDVKEMVEKDQ
CCHHHHHHHHHCCC
>Mature Secondary Structure
MKKTAAVISALMLTFTLAACSSNYVMQTNDGRTIVAKGKPALDNDTGMISYKDANGVEQQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCHHHH
INRSDVKEMVEKDQ
CCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]