Click here to switch to the map view.

The map label for this gene is ygdL [H]

Identifier: 157372044

GI number: 157372044

Start: 4208483

End: 4209289

Strand: Reverse

Name: ygdL [H]

Synonym: Spro_3809

Alternate gene names: 157372044

Gene position: 4209289-4208483 (Counterclockwise)

Preceding gene: 157372045

Following gene: 157372041

Centisome position: 77.25

GC content: 57.25

Gene sequence:

>807_bases
ATGAGCACAGCCTATTCTGAAGCCTACCTGCAGCGTTTTGGCGGCACGGCACGTTTATACGGTCAGCAGGCCCTGGCGCT
GTTTGCCCAGGCGCACATTTGCGTGATTGGCATCGGCGGCGTGGGCTCTTGGGCGGCAGAGGCGTTGGCGCGCACCGGTA
TCGGTGCCATTACGCTGATTGATATGGATGATGTCTGCGTCACTAACACCAACCGCCAAATCCACGCGCTGCGTCAGCAT
GTGGGCCAGTCAAAAACGGAAGTGATGGCGGAGCGCATTCTGGCGATCAACCCGGAGTGCCGGGTGACCTGCATTGACGA
CTTTATTACTGCGGACAACGTTGCCGAGCTGCTGAATAACAATTTTAGCTATGTCATCGATGCGATTGACAGCGTACGAC
CGAAGGCCGCGCTGTTGGCCTATTGTCGTCGTTACAAGATCCCGGTGGTCACTACCGGCGGAGCAGGTGGTCAGATAGAT
CCGACCCAGATTGCAGTGGTCGATCTGGCCAAAACCATTCAGGATCCGCTGGCGGCCAAGCTGCGTGAGCGGTTGAAAAA
TGATTTCAACGTGGTGAAGAACAGCAAGGGCAAATTGGGCATCGACTGCGTATTTTCCAGCGAGCCGCTGGTTTACCCCC
AGCCGGATGGCAGCGTTTGCGCATCACGCAGTACCGCGGAAGGGCCAAAACGAATGGATTGCAGCGCGGGATTTGGCGCG
GCAACCATGGTTACCGCTACCTTTGGTTTTGTCGCCGTTTCCCATGCGCTGAAGAAGATGGTGGCGAAAGCCGCGCGTCA
GGCGTAG

Upstream 100 bases:

>100_bases
TGGCGGCTCGCTGTTAGTCACCCGCTAACGGCAATAATTGACCGCAAGGGCCGGACATTCCGGCCCTTATTATTTGCAAT
GTTAAGGTAATTAAAGCGTT

Downstream 100 bases:

>100_bases
CTAGCGGCCATTTCTTTCACGGCAGCAGCCAGTGCTGCCAGCCCGCTGGCGCGGGTGGCACTGAGTTGAGCACGTAACGC
CAGTAGATCAAACAGCGCCA

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSTAYSEAYLQRFGGTARLYGQQALALFAQAHICVIGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRQH
VGQSKTEVMAERILAINPECRVTCIDDFITADNVAELLNNNFSYVIDAIDSVRPKAALLAYCRRYKIPVVTTGGAGGQID
PTQIAVVDLAKTIQDPLAAKLRERLKNDFNVVKNSKGKLGIDCVFSSEPLVYPQPDGSVCASRSTAEGPKRMDCSAGFGA
ATMVTATFGFVAVSHALKKMVAKAARQA

Sequences:

>Translated_268_residues
MSTAYSEAYLQRFGGTARLYGQQALALFAQAHICVIGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRQH
VGQSKTEVMAERILAINPECRVTCIDDFITADNVAELLNNNFSYVIDAIDSVRPKAALLAYCRRYKIPVVTTGGAGGQID
PTQIAVVDLAKTIQDPLAAKLRERLKNDFNVVKNSKGKLGIDCVFSSEPLVYPQPDGSVCASRSTAEGPKRMDCSAGFGA
ATMVTATFGFVAVSHALKKMVAKAARQA
>Mature_267_residues
STAYSEAYLQRFGGTARLYGQQALALFAQAHICVIGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRQHV
GQSKTEVMAERILAINPECRVTCIDDFITADNVAELLNNNFSYVIDAIDSVRPKAALLAYCRRYKIPVVTTGGAGGQIDP
TQIAVVDLAKTIQDPLAAKLRERLKNDFNVVKNSKGKLGIDCVFSSEPLVYPQPDGSVCASRSTAEGPKRMDCSAGFGAA
TMVTATFGFVAVSHALKKMVAKAARQA

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Homo sapiens, GI4885649, Length=133, Percent_Identity=30.8270676691729, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1789177, Length=267, Percent_Identity=82.3970037453184, Blast_Score=462, Evalue=1e-132,
Organism=Escherichia coli, GI87082356, Length=143, Percent_Identity=30.0699300699301, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787048, Length=131, Percent_Identity=32.0610687022901, Blast_Score=69, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321790, Length=194, Percent_Identity=26.2886597938144, Blast_Score=90, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6322825, Length=208, Percent_Identity=32.2115384615385, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24660640, Length=136, Percent_Identity=30.1470588235294, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24582879, Length=132, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 28586; Mature: 28455

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAYSEAYLQRFGGTARLYGQQALALFAQAHICVIGIGGVGSWAAEALARTGIGAITLI
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCEEEEE
DMDDVCVTNTNRQIHALRQHVGQSKTEVMAERILAINPECRVTCIDDFITADNVAELLNN
ECCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHCC
NFSYVIDAIDSVRPKAALLAYCRRYKIPVVTTGGAGGQIDPTQIAVVDLAKTIQDPLAAK
CHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LRERLKNDFNVVKNSKGKLGIDCVFSSEPLVYPQPDGSVCASRSTAEGPKRMDCSAGFGA
HHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
ATMVTATFGFVAVSHALKKMVAKAARQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STAYSEAYLQRFGGTARLYGQQALALFAQAHICVIGIGGVGSWAAEALARTGIGAITLI
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCEEEEE
DMDDVCVTNTNRQIHALRQHVGQSKTEVMAERILAINPECRVTCIDDFITADNVAELLNN
ECCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHCC
NFSYVIDAIDSVRPKAALLAYCRRYKIPVVTTGGAGGQIDPTQIAVVDLAKTIQDPLAAK
CHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LRERLKNDFNVVKNSKGKLGIDCVFSSEPLVYPQPDGSVCASRSTAEGPKRMDCSAGFGA
HHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
ATMVTATFGFVAVSHALKKMVAKAARQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]